miRNA display CGI


Results 1 - 20 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28988 3' -60.1 NC_006146.1 + 21120 1.14 0.000839
Target:  5'- aCCUCCACCGUCAUCGCCGGCUCCGCCa -3'
miRNA:   3'- -GGAGGUGGCAGUAGCGGCCGAGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 27276 1.14 0.000839
Target:  5'- aCCUCCACCGUCAUCGCCGGCUCCGCCa -3'
miRNA:   3'- -GGAGGUGGCAGUAGCGGCCGAGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 24198 1.14 0.000839
Target:  5'- aCCUCCACCGUCAUCGCCGGCUCCGCCa -3'
miRNA:   3'- -GGAGGUGGCAGUAGCGGCCGAGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 18042 1.14 0.000839
Target:  5'- aCCUCCACCGUCAUCGCCGGCUCCGCCa -3'
miRNA:   3'- -GGAGGUGGCAGUAGCGGCCGAGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 14965 1.06 0.002978
Target:  5'- aCCUCC-CCGUCAUCGCCGGCUCCGCCa -3'
miRNA:   3'- -GGAGGuGGCAGUAGCGGCCGAGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 41486 0.88 0.050385
Target:  5'- gCCUCCGCCGUCuccGUCGCCGGgucCUCCGCg -3'
miRNA:   3'- -GGAGGUGGCAG---UAGCGGCC---GAGGCGg -5'
28988 3' -60.1 NC_006146.1 + 4398 0.83 0.105251
Target:  5'- aCCaCCACCGUCAUgaaGCCGGUUCcCGCCg -3'
miRNA:   3'- -GGaGGUGGCAGUAg--CGGCCGAG-GCGG- -5'
28988 3' -60.1 NC_006146.1 + 160878 0.77 0.255282
Target:  5'- gCCUCUACCGgcccuggUCAUgUGCCGGCUCCugaagGCCu -3'
miRNA:   3'- -GGAGGUGGC-------AGUA-GCGGCCGAGG-----CGG- -5'
28988 3' -60.1 NC_006146.1 + 48311 0.76 0.286273
Target:  5'- cCCUCCACCGUCGgaggUGCUGGCggugguggGCCa -3'
miRNA:   3'- -GGAGGUGGCAGUa---GCGGCCGagg-----CGG- -5'
28988 3' -60.1 NC_006146.1 + 113909 0.74 0.355455
Target:  5'- aCUUCACCGUC----CCGGCUgCCGCCg -3'
miRNA:   3'- gGAGGUGGCAGuagcGGCCGA-GGCGG- -5'
28988 3' -60.1 NC_006146.1 + 58848 0.72 0.444174
Target:  5'- aCUgCGCCGUCAagGCCGGCa--GCCc -3'
miRNA:   3'- gGAgGUGGCAGUagCGGCCGaggCGG- -5'
28988 3' -60.1 NC_006146.1 + 119390 0.72 0.444174
Target:  5'- gCUCCcgGCCGUCAUucauucggauaaCGCCGaGCaaaagCCGCCg -3'
miRNA:   3'- gGAGG--UGGCAGUA------------GCGGC-CGa----GGCGG- -5'
28988 3' -60.1 NC_006146.1 + 53950 0.72 0.488404
Target:  5'- aCCUCCGCCcgccgcccGUCuUCGCCccGGCgcagCCGCg -3'
miRNA:   3'- -GGAGGUGG--------CAGuAGCGG--CCGa---GGCGg -5'
28988 3' -60.1 NC_006146.1 + 46985 0.71 0.4975
Target:  5'- gCCUuuGCCcUCG-CGCCGGCcggccagccaUCCGCCc -3'
miRNA:   3'- -GGAggUGGcAGUaGCGGCCG----------AGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 162211 0.71 0.506671
Target:  5'- aCUCCACCGUgGa-GCCGGuCUCCcaggguGCCu -3'
miRNA:   3'- gGAGGUGGCAgUagCGGCC-GAGG------CGG- -5'
28988 3' -60.1 NC_006146.1 + 164699 0.71 0.506671
Target:  5'- aCCUUCACCGUCuucaccAUCGCCcccaucucCUCCGUCa -3'
miRNA:   3'- -GGAGGUGGCAG------UAGCGGcc------GAGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 70138 0.71 0.506671
Target:  5'- aUCUuuGCCGcCuUCGCCuGGCUCCugGCCg -3'
miRNA:   3'- -GGAggUGGCaGuAGCGG-CCGAGG--CGG- -5'
28988 3' -60.1 NC_006146.1 + 68954 0.71 0.506671
Target:  5'- aUCUCCGCCGUUGUCucaUCGGUcaCCGCCc -3'
miRNA:   3'- -GGAGGUGGCAGUAGc--GGCCGa-GGCGG- -5'
28988 3' -60.1 NC_006146.1 + 101667 0.71 0.51036
Target:  5'- uCCUCCAg-GUCAUCGUccaagagacagaggaCGGuCUCCGCCc -3'
miRNA:   3'- -GGAGGUggCAGUAGCG---------------GCC-GAGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 111208 0.71 0.515914
Target:  5'- aCCUCCGCC-UCcggCaCCGGCauugCCGCCg -3'
miRNA:   3'- -GGAGGUGGcAGua-GcGGCCGa---GGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.