miRNA display CGI


Results 21 - 40 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28988 3' -60.1 NC_006146.1 + 169370 0.71 0.534596
Target:  5'- gCC-CCGCCGgcccccccugCAggCGCCGGCcccucCCGCCg -3'
miRNA:   3'- -GGaGGUGGCa---------GUa-GCGGCCGa----GGCGG- -5'
28988 3' -60.1 NC_006146.1 + 168438 0.71 0.534596
Target:  5'- gCC-CCGCCGgcccccccugCAggCGCCGGCcccucCCGCCg -3'
miRNA:   3'- -GGaGGUGGCa---------GUa-GCGGCCGa----GGCGG- -5'
28988 3' -60.1 NC_006146.1 + 167506 0.71 0.534596
Target:  5'- gCC-CCGCCGgcccccccugCAggCGCCGGCcccucCCGCCg -3'
miRNA:   3'- -GGaGGUGGCa---------GUa-GCGGCCGa----GGCGG- -5'
28988 3' -60.1 NC_006146.1 + 56602 0.71 0.534596
Target:  5'- cCCgCCGCCgGUCuccUCGCCGGCgUCCauaguggcaGCCa -3'
miRNA:   3'- -GGaGGUGG-CAGu--AGCGGCCG-AGG---------CGG- -5'
28988 3' -60.1 NC_006146.1 + 55543 0.71 0.534596
Target:  5'- gCUCCGCCGcCA-CGCCGGC-CaggaagGCCu -3'
miRNA:   3'- gGAGGUGGCaGUaGCGGCCGaGg-----CGG- -5'
28988 3' -60.1 NC_006146.1 + 43476 0.71 0.534596
Target:  5'- gCCUCCucggcgGCCGUUGaCaCCGGCUCCGgCg -3'
miRNA:   3'- -GGAGG------UGGCAGUaGcGGCCGAGGCgG- -5'
28988 3' -60.1 NC_006146.1 + 13210 0.71 0.544027
Target:  5'- gCCUCCucggguucaGCCG-C-UgGCUGGCUCUGCCc -3'
miRNA:   3'- -GGAGG---------UGGCaGuAgCGGCCGAGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 16288 0.71 0.544027
Target:  5'- gCCUCCucggguucaGCCG-C-UgGCUGGCUCUGCCc -3'
miRNA:   3'- -GGAGG---------UGGCaGuAgCGGCCGAGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 19366 0.71 0.544027
Target:  5'- gCCUCCucggguucaGCCG-C-UgGCUGGCUCUGCCc -3'
miRNA:   3'- -GGAGG---------UGGCaGuAgCGGCCGAGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 46942 0.71 0.544027
Target:  5'- gUCUCCAgccacagggugcCCG-CGuauuUCGCCGGCccggCCGCCg -3'
miRNA:   3'- -GGAGGU------------GGCaGU----AGCGGCCGa---GGCGG- -5'
28988 3' -60.1 NC_006146.1 + 28600 0.71 0.544027
Target:  5'- gCCUCCucggguucaGCCG-C-UgGCUGGCUCUGCCc -3'
miRNA:   3'- -GGAGG---------UGGCaGuAgCGGCCGAGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 25522 0.71 0.544027
Target:  5'- gCCUCCucggguucaGCCG-C-UgGCUGGCUCUGCCc -3'
miRNA:   3'- -GGAGG---------UGGCaGuAgCGGCCGAGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 22444 0.71 0.544027
Target:  5'- gCCUCCucggguucaGCCG-C-UgGCUGGCUCUGCCc -3'
miRNA:   3'- -GGAGG---------UGGCaGuAgCGGCCGAGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 86037 0.7 0.553511
Target:  5'- aCUggagCCGCUGUCucCGUCGGCUCCuCCa -3'
miRNA:   3'- -GGa---GGUGGCAGuaGCGGCCGAGGcGG- -5'
28988 3' -60.1 NC_006146.1 + 33222 0.7 0.553511
Target:  5'- gCUCCggggcaGCCGgguggcCGCCGGCgggUCCGCCg -3'
miRNA:   3'- gGAGG------UGGCagua--GCGGCCG---AGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 170301 0.7 0.563044
Target:  5'- gCC-CCGCCGgcccccccugCggCGCCGGCcccucCCGCCg -3'
miRNA:   3'- -GGaGGUGGCa---------GuaGCGGCCGa----GGCGG- -5'
28988 3' -60.1 NC_006146.1 + 33926 0.7 0.563044
Target:  5'- uCCUCCGuCCGgugggugCGgucCGCUGGgUCCGCUg -3'
miRNA:   3'- -GGAGGU-GGCa------GUa--GCGGCCgAGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 68317 0.7 0.572621
Target:  5'- cCCUCCucggGCCGcgagaggauggCGUCGaggaCGGcCUCCGCCg -3'
miRNA:   3'- -GGAGG----UGGCa----------GUAGCg---GCC-GAGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 160982 0.7 0.572621
Target:  5'- gCUCCugC----UCGCgGGCUCCGUCg -3'
miRNA:   3'- gGAGGugGcaguAGCGgCCGAGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 91813 0.7 0.579348
Target:  5'- aUCUCCagcgcaaguuggcaGCCGUCAUCGCauGCgUCCGgCg -3'
miRNA:   3'- -GGAGG--------------UGGCAGUAGCGgcCG-AGGCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.