miRNA display CGI


Results 41 - 60 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28988 3' -60.1 NC_006146.1 + 136615 0.66 0.790002
Target:  5'- gCUCCggcggggggugGCCGggcCGcUGCCGGgUCCGCUg -3'
miRNA:   3'- gGAGG-----------UGGCa--GUaGCGGCCgAGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 137265 0.66 0.790002
Target:  5'- gCUCCggcggggggugGCCGggcCGcUGCCGGgUCCGCUg -3'
miRNA:   3'- gGAGG-----------UGGCa--GUaGCGGCCgAGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 137358 0.66 0.790002
Target:  5'- gCUCCggcggggggugGCCGggcCGcUGCCGGgUCCGCUg -3'
miRNA:   3'- gGAGG-----------UGGCa--GUaGCGGCCgAGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 137451 0.66 0.790002
Target:  5'- gCUCCggcggggggugGCCGggcCGcUGCCGGgUCCGCUg -3'
miRNA:   3'- gGAGG-----------UGGCa--GUaGCGGCCgAGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 137544 0.66 0.790002
Target:  5'- gCUCCggcggggggugGCCGggcCGcUGCCGGgUCCGCUg -3'
miRNA:   3'- gGAGG-----------UGGCa--GUaGCGGCCgAGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 135593 0.66 0.790002
Target:  5'- gCUCCggcggggggugGCCGggcCGcUGCCGGgUCCGCUg -3'
miRNA:   3'- gGAGG-----------UGGCa--GUaGCGGCCgAGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 135686 0.66 0.790002
Target:  5'- gCUCCggcggggggugGCCGggcCGcUGCCGGgUCCGCUg -3'
miRNA:   3'- gGAGG-----------UGGCa--GUaGCGGCCgAGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 157722 0.66 0.781282
Target:  5'- aCCgcgaCCACCGUgGUCuGCgCGGCcacggaCUGCCu -3'
miRNA:   3'- -GGa---GGUGGCAgUAG-CG-GCCGa-----GGCGG- -5'
28988 3' -60.1 NC_006146.1 + 52117 0.66 0.781282
Target:  5'- aCCggggCCGcCCGUCggUGCCucggaGGCccCCGCCg -3'
miRNA:   3'- -GGa---GGU-GGCAGuaGCGG-----CCGa-GGCGG- -5'
28988 3' -60.1 NC_006146.1 + 128630 0.66 0.781282
Target:  5'- gCCUCC-CCGgUGUCGCCcaGCUgaGCCa -3'
miRNA:   3'- -GGAGGuGGCaGUAGCGGc-CGAggCGG- -5'
28988 3' -60.1 NC_006146.1 + 137795 0.66 0.781282
Target:  5'- -gUCCGCCGgaucCGCUucggGGgUCCGCCg -3'
miRNA:   3'- ggAGGUGGCaguaGCGG----CCgAGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 56156 0.66 0.781282
Target:  5'- aCCUCCccgcgGCCGUCcuugaggaugCGCCGauaCUCgGCCg -3'
miRNA:   3'- -GGAGG-----UGGCAGua--------GCGGCc--GAGgCGG- -5'
28988 3' -60.1 NC_006146.1 + 52921 0.67 0.772442
Target:  5'- gCC-CC-CCGggggCGCUGGCcucgUCCGCCg -3'
miRNA:   3'- -GGaGGuGGCaguaGCGGCCG----AGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 42494 0.67 0.772442
Target:  5'- cCCUCCccugGCCGUguUCuGCCuggacugcGGCUaCUGCCu -3'
miRNA:   3'- -GGAGG----UGGCAguAG-CGG--------CCGA-GGCGG- -5'
28988 3' -60.1 NC_006146.1 + 129997 0.67 0.772442
Target:  5'- aCCaUCCAUCGcCGcccggaUCGCagacgaggcccCGGCUCCGUCu -3'
miRNA:   3'- -GG-AGGUGGCaGU------AGCG-----------GCCGAGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 16380 0.67 0.763489
Target:  5'- gCCUCCAggCGUCcUC-CUGGuCUCCGCUc -3'
miRNA:   3'- -GGAGGUg-GCAGuAGcGGCC-GAGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 68451 0.67 0.763489
Target:  5'- cCCUCCACCG-CGUgGCgGGauCUCuCGUg -3'
miRNA:   3'- -GGAGGUGGCaGUAgCGgCC--GAG-GCGg -5'
28988 3' -60.1 NC_006146.1 + 62008 0.67 0.763489
Target:  5'- aCC-CCGcCCGUgCcgUGCCGGCg-CGCCc -3'
miRNA:   3'- -GGaGGU-GGCA-GuaGCGGCCGagGCGG- -5'
28988 3' -60.1 NC_006146.1 + 28692 0.67 0.763489
Target:  5'- gCCUCCAggCGUCcUC-CUGGuCUCCGCUc -3'
miRNA:   3'- -GGAGGUg-GCAGuAGcGGCC-GAGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 122313 0.67 0.763489
Target:  5'- --gCCACCccCAUCGuCUGGCUCUuguGCCa -3'
miRNA:   3'- ggaGGUGGcaGUAGC-GGCCGAGG---CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.