miRNA display CGI


Results 1 - 20 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28988 3' -60.1 NC_006146.1 + 1706 0.68 0.688742
Target:  5'- gCUCUGCUGUUucUGCUGuCUCCGCCu -3'
miRNA:   3'- gGAGGUGGCAGuaGCGGCcGAGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 4331 0.66 0.80705
Target:  5'- gCUUCaCGCCcagGUCAcgcgcguagUCGCUGGCcgCCGUCa -3'
miRNA:   3'- -GGAG-GUGG---CAGU---------AGCGGCCGa-GGCGG- -5'
28988 3' -60.1 NC_006146.1 + 4398 0.83 0.105251
Target:  5'- aCCaCCACCGUCAUgaaGCCGGUUCcCGCCg -3'
miRNA:   3'- -GGaGGUGGCAGUAg--CGGCCGAG-GCGG- -5'
28988 3' -60.1 NC_006146.1 + 4532 0.68 0.717304
Target:  5'- --aCCAUC-UCggUGCCGGCagCCGCCg -3'
miRNA:   3'- ggaGGUGGcAGuaGCGGCCGa-GGCGG- -5'
28988 3' -60.1 NC_006146.1 + 4718 0.66 0.815362
Target:  5'- gCCggCACCGagAUggucacccccCGCUGGC-CCGCCa -3'
miRNA:   3'- -GGagGUGGCagUA----------GCGGCCGaGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 11200 0.68 0.687782
Target:  5'- cCCUCCGucaaagaagacccCCGUCA---CCGGCagcgCCGCCu -3'
miRNA:   3'- -GGAGGU-------------GGCAGUagcGGCCGa---GGCGG- -5'
28988 3' -60.1 NC_006146.1 + 13210 0.71 0.544027
Target:  5'- gCCUCCucggguucaGCCG-C-UgGCUGGCUCUGCCc -3'
miRNA:   3'- -GGAGG---------UGGCaGuAgCGGCCGAGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 13302 0.67 0.763489
Target:  5'- gCCUCCAggCGUCcUC-CUGGuCUCCGCUc -3'
miRNA:   3'- -GGAGGUg-GCAGuAGcGGCC-GAGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 14965 1.06 0.002978
Target:  5'- aCCUCC-CCGUCAUCGCCGGCUCCGCCa -3'
miRNA:   3'- -GGAGGuGGCAGUAGCGGCCGAGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 15403 0.69 0.620957
Target:  5'- cCCUCCugCGgacgcgugugggUCcUUGUgGGuCUCCGCCg -3'
miRNA:   3'- -GGAGGugGC------------AGuAGCGgCC-GAGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 16288 0.71 0.544027
Target:  5'- gCCUCCucggguucaGCCG-C-UgGCUGGCUCUGCCc -3'
miRNA:   3'- -GGAGG---------UGGCaGuAgCGGCCGAGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 16380 0.67 0.763489
Target:  5'- gCCUCCAggCGUCcUC-CUGGuCUCCGCUc -3'
miRNA:   3'- -GGAGGUg-GCAGuAGcGGCC-GAGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 18042 1.14 0.000839
Target:  5'- aCCUCCACCGUCAUCGCCGGCUCCGCCa -3'
miRNA:   3'- -GGAGGUGGCAGUAGCGGCCGAGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 18480 0.69 0.620957
Target:  5'- cCCUCCugCGgacgcgugugggUCcUUGUgGGuCUCCGCCg -3'
miRNA:   3'- -GGAGGugGC------------AGuAGCGgCC-GAGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 19366 0.71 0.544027
Target:  5'- gCCUCCucggguucaGCCG-C-UgGCUGGCUCUGCCc -3'
miRNA:   3'- -GGAGG---------UGGCaGuAgCGGCCGAGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 19458 0.67 0.763489
Target:  5'- gCCUCCAggCGUCcUC-CUGGuCUCCGCUc -3'
miRNA:   3'- -GGAGGUg-GCAGuAGcGGCC-GAGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 21120 1.14 0.000839
Target:  5'- aCCUCCACCGUCAUCGCCGGCUCCGCCa -3'
miRNA:   3'- -GGAGGUGGCAGUAGCGGCCGAGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 21558 0.69 0.620957
Target:  5'- cCCUCCugCGgacgcgugugggUCcUUGUgGGuCUCCGCCg -3'
miRNA:   3'- -GGAGGugGC------------AGuAGCGgCC-GAGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 22444 0.71 0.544027
Target:  5'- gCCUCCucggguucaGCCG-C-UgGCUGGCUCUGCCc -3'
miRNA:   3'- -GGAGG---------UGGCaGuAgCGGCCGAGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 22536 0.67 0.763489
Target:  5'- gCCUCCAggCGUCcUC-CUGGuCUCCGCUc -3'
miRNA:   3'- -GGAGGUg-GCAGuAGcGGCC-GAGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.