miRNA display CGI


Results 21 - 40 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28988 3' -60.1 NC_006146.1 + 24198 1.14 0.000839
Target:  5'- aCCUCCACCGUCAUCGCCGGCUCCGCCa -3'
miRNA:   3'- -GGAGGUGGCAGUAGCGGCCGAGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 24636 0.69 0.620957
Target:  5'- cCCUCCugCGgacgcgugugggUCcUUGUgGGuCUCCGCCg -3'
miRNA:   3'- -GGAGGugGC------------AGuAGCGgCC-GAGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 25522 0.71 0.544027
Target:  5'- gCCUCCucggguucaGCCG-C-UgGCUGGCUCUGCCc -3'
miRNA:   3'- -GGAGG---------UGGCaGuAgCGGCCGAGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 25614 0.67 0.763489
Target:  5'- gCCUCCAggCGUCcUC-CUGGuCUCCGCUc -3'
miRNA:   3'- -GGAGGUg-GCAGuAGcGGCC-GAGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 27276 1.14 0.000839
Target:  5'- aCCUCCACCGUCAUCGCCGGCUCCGCCa -3'
miRNA:   3'- -GGAGGUGGCAGUAGCGGCCGAGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 27714 0.69 0.620957
Target:  5'- cCCUCCugCGgacgcgugugggUCcUUGUgGGuCUCCGCCg -3'
miRNA:   3'- -GGAGGugGC------------AGuAGCGgCC-GAGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 28600 0.71 0.544027
Target:  5'- gCCUCCucggguucaGCCG-C-UgGCUGGCUCUGCCc -3'
miRNA:   3'- -GGAGG---------UGGCaGuAgCGGCCGAGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 28692 0.67 0.763489
Target:  5'- gCCUCCAggCGUCcUC-CUGGuCUCCGCUc -3'
miRNA:   3'- -GGAGGUg-GCAGuAGcGGCC-GAGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 33109 0.68 0.707839
Target:  5'- gCCggguggCCGCCGgcggguUCGCCGGg-CCGCUg -3'
miRNA:   3'- -GGa-----GGUGGCagu---AGCGGCCgaGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 33222 0.7 0.553511
Target:  5'- gCUCCggggcaGCCGgguggcCGCCGGCgggUCCGCCg -3'
miRNA:   3'- gGAGG------UGGCagua--GCGGCCG---AGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 33344 0.69 0.64039
Target:  5'- gCUCCggggcaGCCGgguggcCGCCGGUgggUCCGCCg -3'
miRNA:   3'- gGAGG------UGGCagua--GCGGCCG---AGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 33926 0.7 0.563044
Target:  5'- uCCUCCGuCCGgugggugCGgucCGCUGGgUCCGCUg -3'
miRNA:   3'- -GGAGGU-GGCa------GUa--GCGGCCgAGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 40319 0.68 0.717304
Target:  5'- cCCUCCAgaCGguguccCAgaaacaggCGCCGGCUCCGgUa -3'
miRNA:   3'- -GGAGGUg-GCa-----GUa-------GCGGCCGAGGCgG- -5'
28988 3' -60.1 NC_006146.1 + 41090 0.66 0.798594
Target:  5'- aCUgCAUCGUCGUC-CgGuGCUCCGUg -3'
miRNA:   3'- gGAgGUGGCAGUAGcGgC-CGAGGCGg -5'
28988 3' -60.1 NC_006146.1 + 41486 0.88 0.050385
Target:  5'- gCCUCCGCCGUCuccGUCGCCGGgucCUCCGCg -3'
miRNA:   3'- -GGAGGUGGCAG---UAGCGGCC---GAGGCGg -5'
28988 3' -60.1 NC_006146.1 + 42494 0.67 0.772442
Target:  5'- cCCUCCccugGCCGUguUCuGCCuggacugcGGCUaCUGCCu -3'
miRNA:   3'- -GGAGG----UGGCAguAG-CGG--------CCGA-GGCGG- -5'
28988 3' -60.1 NC_006146.1 + 43419 0.67 0.760782
Target:  5'- aCCcCCGCCGUC-UCcucguccaucaguaGCCuGCgggCCGCCa -3'
miRNA:   3'- -GGaGGUGGCAGuAG--------------CGGcCGa--GGCGG- -5'
28988 3' -60.1 NC_006146.1 + 43476 0.71 0.534596
Target:  5'- gCCUCCucggcgGCCGUUGaCaCCGGCUCCGgCg -3'
miRNA:   3'- -GGAGG------UGGCAGUaGcGGCCGAGGCgG- -5'
28988 3' -60.1 NC_006146.1 + 43686 0.7 0.582236
Target:  5'- gCC-CCGCCGcCGgaGCCGGUgucaacggCCGCCg -3'
miRNA:   3'- -GGaGGUGGCaGUagCGGCCGa-------GGCGG- -5'
28988 3' -60.1 NC_006146.1 + 46942 0.71 0.544027
Target:  5'- gUCUCCAgccacagggugcCCG-CGuauuUCGCCGGCccggCCGCCg -3'
miRNA:   3'- -GGAGGU------------GGCaGU----AGCGGCCGa---GGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.