miRNA display CGI


Results 1 - 20 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28988 3' -60.1 NC_006146.1 + 170301 0.7 0.563044
Target:  5'- gCC-CCGCCGgcccccccugCggCGCCGGCcccucCCGCCg -3'
miRNA:   3'- -GGaGGUGGCa---------GuaGCGGCCGa----GGCGG- -5'
28988 3' -60.1 NC_006146.1 + 169370 0.71 0.534596
Target:  5'- gCC-CCGCCGgcccccccugCAggCGCCGGCcccucCCGCCg -3'
miRNA:   3'- -GGaGGUGGCa---------GUa-GCGGCCGa----GGCGG- -5'
28988 3' -60.1 NC_006146.1 + 168438 0.71 0.534596
Target:  5'- gCC-CCGCCGgcccccccugCAggCGCCGGCcccucCCGCCg -3'
miRNA:   3'- -GGaGGUGGCa---------GUa-GCGGCCGa----GGCGG- -5'
28988 3' -60.1 NC_006146.1 + 167506 0.71 0.534596
Target:  5'- gCC-CCGCCGgcccccccugCAggCGCCGGCcccucCCGCCg -3'
miRNA:   3'- -GGaGGUGGCa---------GUa-GCGGCCGa----GGCGG- -5'
28988 3' -60.1 NC_006146.1 + 164699 0.71 0.506671
Target:  5'- aCCUUCACCGUCuucaccAUCGCCcccaucucCUCCGUCa -3'
miRNA:   3'- -GGAGGUGGCAG------UAGCGGcc------GAGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 162211 0.71 0.506671
Target:  5'- aCUCCACCGUgGa-GCCGGuCUCCcaggguGCCu -3'
miRNA:   3'- gGAGGUGGCAgUagCGGCC-GAGG------CGG- -5'
28988 3' -60.1 NC_006146.1 + 161978 0.66 0.823525
Target:  5'- -aUCCACCGUgGa-GCCGGuCUCCcacggggcguuGCCu -3'
miRNA:   3'- ggAGGUGGCAgUagCGGCC-GAGG-----------CGG- -5'
28988 3' -60.1 NC_006146.1 + 160982 0.7 0.572621
Target:  5'- gCUCCugC----UCGCgGGCUCCGUCg -3'
miRNA:   3'- gGAGGugGcaguAGCGgCCGAGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 160878 0.77 0.255282
Target:  5'- gCCUCUACCGgcccuggUCAUgUGCCGGCUCCugaagGCCu -3'
miRNA:   3'- -GGAGGUGGC-------AGUA-GCGGCCGAGG-----CGG- -5'
28988 3' -60.1 NC_006146.1 + 159003 0.7 0.591882
Target:  5'- gCUCCACCGcguaGUUGCCGgGCcCCGUUg -3'
miRNA:   3'- gGAGGUGGCag--UAGCGGC-CGaGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 158183 0.66 0.801993
Target:  5'- gCCUCCuugGCCGUCAggacccccuugucaaUgGCCaGGCUCCu-- -3'
miRNA:   3'- -GGAGG---UGGCAGU---------------AgCGG-CCGAGGcgg -5'
28988 3' -60.1 NC_006146.1 + 157722 0.66 0.781282
Target:  5'- aCCgcgaCCACCGUgGUCuGCgCGGCcacggaCUGCCu -3'
miRNA:   3'- -GGa---GGUGGCAgUAG-CG-GCCGa-----GGCGG- -5'
28988 3' -60.1 NC_006146.1 + 157588 0.66 0.795173
Target:  5'- aCUCCACCGcccuggugcccagCAcguggggguagUCGCgGGCgggcaCCGCCu -3'
miRNA:   3'- gGAGGUGGCa------------GU-----------AGCGgCCGa----GGCGG- -5'
28988 3' -60.1 NC_006146.1 + 156999 0.66 0.798594
Target:  5'- cCUUCCAaaaaGUCA-CGCgCGGCcUCgGCCg -3'
miRNA:   3'- -GGAGGUgg--CAGUaGCG-GCCG-AGgCGG- -5'
28988 3' -60.1 NC_006146.1 + 155746 0.66 0.814538
Target:  5'- gCUUCCACgG-CGUCGCCcgaggaGCUguagaccCCGCCg -3'
miRNA:   3'- -GGAGGUGgCaGUAGCGGc-----CGA-------GGCGG- -5'
28988 3' -60.1 NC_006146.1 + 155358 0.67 0.73603
Target:  5'- uCCUCCGCCcagcaaCGUgGCCcuGGC-CCGCUg -3'
miRNA:   3'- -GGAGGUGGca----GUAgCGG--CCGaGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 155066 0.66 0.80705
Target:  5'- gUCUCUAUCca-AUCGCuCGGCUCgaUGCCg -3'
miRNA:   3'- -GGAGGUGGcagUAGCG-GCCGAG--GCGG- -5'
28988 3' -60.1 NC_006146.1 + 153468 0.68 0.698315
Target:  5'- cCCUCCGCCugccucCGUCGaCGGCgcacaauggCCGCUg -3'
miRNA:   3'- -GGAGGUGGca----GUAGCgGCCGa--------GGCGG- -5'
28988 3' -60.1 NC_006146.1 + 153426 0.66 0.822716
Target:  5'- cCCaCCACCGUCAUguCCGGCaUCUacgggcgGCCc -3'
miRNA:   3'- -GGaGGUGGCAGUAgcGGCCG-AGG-------CGG- -5'
28988 3' -60.1 NC_006146.1 + 151398 0.7 0.600587
Target:  5'- aUCUCCugCGUCcucugGUCcacgggggaggagGCCGGCcgcuaCCGCCg -3'
miRNA:   3'- -GGAGGugGCAG-----UAG-------------CGGCCGa----GGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.