miRNA display CGI


Results 1 - 20 of 150 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28988 3' -60.1 NC_006146.1 + 18042 1.14 0.000839
Target:  5'- aCCUCCACCGUCAUCGCCGGCUCCGCCa -3'
miRNA:   3'- -GGAGGUGGCAGUAGCGGCCGAGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 19366 0.71 0.544027
Target:  5'- gCCUCCucggguucaGCCG-C-UgGCUGGCUCUGCCc -3'
miRNA:   3'- -GGAGG---------UGGCaGuAgCGGCCGAGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 25522 0.71 0.544027
Target:  5'- gCCUCCucggguucaGCCG-C-UgGCUGGCUCUGCCc -3'
miRNA:   3'- -GGAGG---------UGGCaGuAgCGGCCGAGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 67201 0.66 0.815362
Target:  5'- aUUCCACUGgcCGUgGCCGGU--CGCCu -3'
miRNA:   3'- gGAGGUGGCa-GUAgCGGCCGagGCGG- -5'
28988 3' -60.1 NC_006146.1 + 14965 1.06 0.002978
Target:  5'- aCCUCC-CCGUCAUCGCCGGCUCCGCCa -3'
miRNA:   3'- -GGAGGuGGCAGUAGCGGCCGAGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 48311 0.76 0.286273
Target:  5'- cCCUCCACCGUCGgaggUGCUGGCggugguggGCCa -3'
miRNA:   3'- -GGAGGUGGCAGUa---GCGGCCGagg-----CGG- -5'
28988 3' -60.1 NC_006146.1 + 164699 0.71 0.506671
Target:  5'- aCCUUCACCGUCuucaccAUCGCCcccaucucCUCCGUCa -3'
miRNA:   3'- -GGAGGUGGCAG------UAGCGGcc------GAGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 68954 0.71 0.506671
Target:  5'- aUCUCCGCCGUUGUCucaUCGGUcaCCGCCc -3'
miRNA:   3'- -GGAGGUGGCAGUAGc--GGCCGa-GGCGG- -5'
28988 3' -60.1 NC_006146.1 + 111208 0.71 0.515914
Target:  5'- aCCUCCGCC-UCcggCaCCGGCauugCCGCCg -3'
miRNA:   3'- -GGAGGUGGcAGua-GcGGCCGa---GGCGG- -5'
28988 3' -60.1 NC_006146.1 + 16288 0.71 0.544027
Target:  5'- gCCUCCucggguucaGCCG-C-UgGCUGGCUCUGCCc -3'
miRNA:   3'- -GGAGG---------UGGCaGuAgCGGCCGAGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 55543 0.71 0.534596
Target:  5'- gCUCCGCCGcCA-CGCCGGC-CaggaagGCCu -3'
miRNA:   3'- gGAGGUGGCaGUaGCGGCCGaGg-----CGG- -5'
28988 3' -60.1 NC_006146.1 + 101667 0.71 0.51036
Target:  5'- uCCUCCAg-GUCAUCGUccaagagacagaggaCGGuCUCCGCCc -3'
miRNA:   3'- -GGAGGUggCAGUAGCG---------------GCC-GAGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 21120 1.14 0.000839
Target:  5'- aCCUCCACCGUCAUCGCCGGCUCCGCCa -3'
miRNA:   3'- -GGAGGUGGCAGUAGCGGCCGAGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 56602 0.71 0.534596
Target:  5'- cCCgCCGCCgGUCuccUCGCCGGCgUCCauaguggcaGCCa -3'
miRNA:   3'- -GGaGGUGG-CAGu--AGCGGCCG-AGG---------CGG- -5'
28988 3' -60.1 NC_006146.1 + 24198 1.14 0.000839
Target:  5'- aCCUCCACCGUCAUCGCCGGCUCCGCCa -3'
miRNA:   3'- -GGAGGUGGCAGUAGCGGCCGAGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 70138 0.71 0.506671
Target:  5'- aUCUuuGCCGcCuUCGCCuGGCUCCugGCCg -3'
miRNA:   3'- -GGAggUGGCaGuAGCGG-CCGAGG--CGG- -5'
28988 3' -60.1 NC_006146.1 + 13210 0.71 0.544027
Target:  5'- gCCUCCucggguucaGCCG-C-UgGCUGGCUCUGCCc -3'
miRNA:   3'- -GGAGG---------UGGCaGuAgCGGCCGAGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 22444 0.71 0.544027
Target:  5'- gCCUCCucggguucaGCCG-C-UgGCUGGCUCUGCCc -3'
miRNA:   3'- -GGAGG---------UGGCaGuAgCGGCCGAGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 27276 1.14 0.000839
Target:  5'- aCCUCCACCGUCAUCGCCGGCUCCGCCa -3'
miRNA:   3'- -GGAGGUGGCAGUAGCGGCCGAGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 58848 0.72 0.444174
Target:  5'- aCUgCGCCGUCAagGCCGGCa--GCCc -3'
miRNA:   3'- gGAgGUGGCAGUagCGGCCGaggCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.