miRNA display CGI


Results 21 - 40 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28988 3' -60.1 NC_006146.1 + 33222 0.7 0.553511
Target:  5'- gCUCCggggcaGCCGgguggcCGCCGGCgggUCCGCCg -3'
miRNA:   3'- gGAGG------UGGCagua--GCGGCCG---AGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 25522 0.71 0.544027
Target:  5'- gCCUCCucggguucaGCCG-C-UgGCUGGCUCUGCCc -3'
miRNA:   3'- -GGAGG---------UGGCaGuAgCGGCCGAGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 101667 0.71 0.51036
Target:  5'- uCCUCCAg-GUCAUCGUccaagagacagaggaCGGuCUCCGCCc -3'
miRNA:   3'- -GGAGGUggCAGUAGCG---------------GCC-GAGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 27276 1.14 0.000839
Target:  5'- aCCUCCACCGUCAUCGCCGGCUCCGCCa -3'
miRNA:   3'- -GGAGGUGGCAGUAGCGGCCGAGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 117907 0.68 0.669476
Target:  5'- aCCcCCGCgGcCAcgGCCGGCaggUCCGCCu -3'
miRNA:   3'- -GGaGGUGgCaGUagCGGCCG---AGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 91813 0.7 0.579348
Target:  5'- aUCUCCagcgcaaguuggcaGCCGUCAUCGCauGCgUCCGgCg -3'
miRNA:   3'- -GGAGG--------------UGGCAGUAGCGgcCG-AGGCgG- -5'
28988 3' -60.1 NC_006146.1 + 19366 0.71 0.544027
Target:  5'- gCCUCCucggguucaGCCG-C-UgGCUGGCUCUGCCc -3'
miRNA:   3'- -GGAGG---------UGGCaGuAgCGGCCGAGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 24198 1.14 0.000839
Target:  5'- aCCUCCACCGUCAUCGCCGGCUCCGCCa -3'
miRNA:   3'- -GGAGGUGGCAGUAGCGGCCGAGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 68317 0.7 0.572621
Target:  5'- cCCUCCucggGCCGcgagaggauggCGUCGaggaCGGcCUCCGCCg -3'
miRNA:   3'- -GGAGG----UGGCa----------GUAGCg---GCC-GAGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 21120 1.14 0.000839
Target:  5'- aCCUCCACCGUCAUCGCCGGCUCCGCCa -3'
miRNA:   3'- -GGAGGUGGCAGUAGCGGCCGAGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 22444 0.71 0.544027
Target:  5'- gCCUCCucggguucaGCCG-C-UgGCUGGCUCUGCCc -3'
miRNA:   3'- -GGAGG---------UGGCaGuAgCGGCCGAGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 86037 0.7 0.553511
Target:  5'- aCUggagCCGCUGUCucCGUCGGCUCCuCCa -3'
miRNA:   3'- -GGa---GGUGGCAGuaGCGGCCGAGGcGG- -5'
28988 3' -60.1 NC_006146.1 + 56602 0.71 0.534596
Target:  5'- cCCgCCGCCgGUCuccUCGCCGGCgUCCauaguggcaGCCa -3'
miRNA:   3'- -GGaGGUGG-CAGu--AGCGGCCG-AGG---------CGG- -5'
28988 3' -60.1 NC_006146.1 + 111208 0.71 0.515914
Target:  5'- aCCUCCGCC-UCcggCaCCGGCauugCCGCCg -3'
miRNA:   3'- -GGAGGUGGcAGua-GcGGCCGa---GGCGG- -5'
28988 3' -60.1 NC_006146.1 + 164699 0.71 0.506671
Target:  5'- aCCUUCACCGUCuucaccAUCGCCcccaucucCUCCGUCa -3'
miRNA:   3'- -GGAGGUGGCAG------UAGCGGcc------GAGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 14965 1.06 0.002978
Target:  5'- aCCUCC-CCGUCAUCGCCGGCUCCGCCa -3'
miRNA:   3'- -GGAGGuGGCAGUAGCGGCCGAGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 70613 0.68 0.688742
Target:  5'- gCCUCCACgGcCucUGCUGcCUCCGCCc -3'
miRNA:   3'- -GGAGGUGgCaGuaGCGGCcGAGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 136708 0.68 0.669476
Target:  5'- gCUCCGgCGggggGUgGCCGGCcgCUGCCg -3'
miRNA:   3'- gGAGGUgGCag--UAgCGGCCGa-GGCGG- -5'
28988 3' -60.1 NC_006146.1 + 91547 0.69 0.63456
Target:  5'- gUCUCCuuCuUCAUCGCCGuccugcagcgcagcaGUUCCGCCc -3'
miRNA:   3'- -GGAGGugGcAGUAGCGGC---------------CGAGGCGG- -5'
28988 3' -60.1 NC_006146.1 + 159003 0.7 0.591882
Target:  5'- gCUCCACCGcguaGUUGCCGgGCcCCGUUg -3'
miRNA:   3'- gGAGGUGGCag--UAGCGGC-CGaGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.