Results 1 - 20 of 150 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28988 | 3' | -60.1 | NC_006146.1 | + | 49622 | 0.68 | 0.707839 |
Target: 5'- gCCaaCGCCGggucCAUCGUgGGggCCGCCa -3' miRNA: 3'- -GGagGUGGCa---GUAGCGgCCgaGGCGG- -5' |
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28988 | 3' | -60.1 | NC_006146.1 | + | 62008 | 0.67 | 0.763489 |
Target: 5'- aCC-CCGcCCGUgCcgUGCCGGCg-CGCCc -3' miRNA: 3'- -GGaGGU-GGCA-GuaGCGGCCGagGCGG- -5' |
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28988 | 3' | -60.1 | NC_006146.1 | + | 130119 | 0.67 | 0.75443 |
Target: 5'- --aCCGCCGUgGUgccgCGCCGGCgCC-CCa -3' miRNA: 3'- ggaGGUGGCAgUA----GCGGCCGaGGcGG- -5' |
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28988 | 3' | -60.1 | NC_006146.1 | + | 57243 | 0.67 | 0.75443 |
Target: 5'- cCCUcCCGCC-UCAacccUGgCGGCUUCGCCc -3' miRNA: 3'- -GGA-GGUGGcAGUa---GCgGCCGAGGCGG- -5' |
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28988 | 3' | -60.1 | NC_006146.1 | + | 155358 | 0.67 | 0.73603 |
Target: 5'- uCCUCCGCCcagcaaCGUgGCCcuGGC-CCGCUg -3' miRNA: 3'- -GGAGGUGGca----GUAgCGG--CCGaGGCGG- -5' |
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28988 | 3' | -60.1 | NC_006146.1 | + | 57810 | 0.67 | 0.730444 |
Target: 5'- uCCUCCAaCCGUCuguagCGCUgaaaguucccagacaGGCaaCCGCCc -3' miRNA: 3'- -GGAGGU-GGCAGua---GCGG---------------CCGa-GGCGG- -5' |
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28988 | 3' | -60.1 | NC_006146.1 | + | 90350 | 0.67 | 0.726704 |
Target: 5'- gCCUCUACC-UCGgcuGCCuccuGCUCCGCUg -3' miRNA: 3'- -GGAGGUGGcAGUag-CGGc---CGAGGCGG- -5' |
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28988 | 3' | -60.1 | NC_006146.1 | + | 109904 | 0.67 | 0.726704 |
Target: 5'- gCCagaCACgGUCAUgGCgGaGCUCUGCCc -3' miRNA: 3'- -GGag-GUGgCAGUAgCGgC-CGAGGCGG- -5' |
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28988 | 3' | -60.1 | NC_006146.1 | + | 40319 | 0.68 | 0.717304 |
Target: 5'- cCCUCCAgaCGguguccCAgaaacaggCGCCGGCUCCGgUa -3' miRNA: 3'- -GGAGGUg-GCa-----GUa-------GCGGCCGAGGCgG- -5' |
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28988 | 3' | -60.1 | NC_006146.1 | + | 68451 | 0.67 | 0.763489 |
Target: 5'- cCCUCCACCG-CGUgGCgGGauCUCuCGUg -3' miRNA: 3'- -GGAGGUGGCaGUAgCGgCC--GAG-GCGg -5' |
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28988 | 3' | -60.1 | NC_006146.1 | + | 52117 | 0.66 | 0.781282 |
Target: 5'- aCCggggCCGcCCGUCggUGCCucggaGGCccCCGCCg -3' miRNA: 3'- -GGa---GGU-GGCAGuaGCGG-----CCGa-GGCGG- -5' |
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28988 | 3' | -60.1 | NC_006146.1 | + | 157722 | 0.66 | 0.781282 |
Target: 5'- aCCgcgaCCACCGUgGUCuGCgCGGCcacggaCUGCCu -3' miRNA: 3'- -GGa---GGUGGCAgUAG-CG-GCCGa-----GGCGG- -5' |
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28988 | 3' | -60.1 | NC_006146.1 | + | 153426 | 0.66 | 0.822716 |
Target: 5'- cCCaCCACCGUCAUguCCGGCaUCUacgggcgGCCc -3' miRNA: 3'- -GGaGGUGGCAGUAgcGGCCG-AGG-------CGG- -5' |
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28988 | 3' | -60.1 | NC_006146.1 | + | 4718 | 0.66 | 0.815362 |
Target: 5'- gCCggCACCGagAUggucacccccCGCUGGC-CCGCCa -3' miRNA: 3'- -GGagGUGGCagUA----------GCGGCCGaGGCGG- -5' |
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28988 | 3' | -60.1 | NC_006146.1 | + | 95114 | 0.66 | 0.80705 |
Target: 5'- cCCUgCAUCGUCugCGUgGGCU-CGCCc -3' miRNA: 3'- -GGAgGUGGCAGuaGCGgCCGAgGCGG- -5' |
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28988 | 3' | -60.1 | NC_006146.1 | + | 4331 | 0.66 | 0.80705 |
Target: 5'- gCUUCaCGCCcagGUCAcgcgcguagUCGCUGGCcgCCGUCa -3' miRNA: 3'- -GGAG-GUGG---CAGU---------AGCGGCCGa-GGCGG- -5' |
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28988 | 3' | -60.1 | NC_006146.1 | + | 142764 | 0.66 | 0.80705 |
Target: 5'- --gCCAauCCG-CA-CGCaGGCUCCGCCu -3' miRNA: 3'- ggaGGU--GGCaGUaGCGgCCGAGGCGG- -5' |
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28988 | 3' | -60.1 | NC_006146.1 | + | 41090 | 0.66 | 0.798594 |
Target: 5'- aCUgCAUCGUCGUC-CgGuGCUCCGUg -3' miRNA: 3'- gGAgGUGGCAGUAGcGgC-CGAGGCGg -5' |
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28988 | 3' | -60.1 | NC_006146.1 | + | 55994 | 0.66 | 0.798594 |
Target: 5'- uCUUCCACCGccccgaGUCGCUGGCcagcguggUgGCCu -3' miRNA: 3'- -GGAGGUGGCag----UAGCGGCCGa-------GgCGG- -5' |
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28988 | 3' | -60.1 | NC_006146.1 | + | 77315 | 0.66 | 0.790002 |
Target: 5'- uCCUCCACCGUCuuugguUUGCaaugggccaGGUUCUuCCc -3' miRNA: 3'- -GGAGGUGGCAGu-----AGCGg--------CCGAGGcGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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