miRNA display CGI


Results 1 - 20 of 281 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28988 5' -58 NC_006146.1 + 115949 0.66 0.863632
Target:  5'- -cGGGAccCCCAAuGUc-AGCCGCCGGg -3'
miRNA:   3'- uuCCCUcuGGGUU-CGcuUCGGUGGCC- -5'
28988 5' -58 NC_006146.1 + 98985 0.66 0.863632
Target:  5'- cAGGucAGGCCCAGGUcaGAGGCCGCgCGc -3'
miRNA:   3'- uUCCc-UCUGGGUUCG--CUUCGGUG-GCc -5'
28988 5' -58 NC_006146.1 + 93708 0.66 0.863632
Target:  5'- --aGGAGGCCgugGAGaCGAGGCuCAUCGGa -3'
miRNA:   3'- uucCCUCUGGg--UUC-GCUUCG-GUGGCC- -5'
28988 5' -58 NC_006146.1 + 146898 0.66 0.863632
Target:  5'- gGAGGGcuGGGCCU--GCGAGGUUcuguugggGCCGGg -3'
miRNA:   3'- -UUCCC--UCUGGGuuCGCUUCGG--------UGGCC- -5'
28988 5' -58 NC_006146.1 + 84628 0.66 0.863632
Target:  5'- uGAGGGGGcaGCCUggGCuuugaGggGCaGCUGGg -3'
miRNA:   3'- -UUCCCUC--UGGGuuCG-----CuuCGgUGGCC- -5'
28988 5' -58 NC_006146.1 + 132929 0.66 0.856098
Target:  5'- --cGGAGaACCgGGGCuacuGggGaCCACCGGg -3'
miRNA:   3'- uucCCUC-UGGgUUCG----CuuC-GGUGGCC- -5'
28988 5' -58 NC_006146.1 + 82082 0.66 0.856098
Target:  5'- cAGGGAGcCUCAGGCccAGCCACa-- -3'
miRNA:   3'- uUCCCUCuGGGUUCGcuUCGGUGgcc -5'
28988 5' -58 NC_006146.1 + 33111 0.66 0.856098
Target:  5'- -cGGGuGGCCgCcGGCGGGuUCGCCGGg -3'
miRNA:   3'- uuCCCuCUGG-GuUCGCUUcGGUGGCC- -5'
28988 5' -58 NC_006146.1 + 122098 0.66 0.856098
Target:  5'- -uGGGAGGCUgGGGCGuuGCCcaGCUuGGg -3'
miRNA:   3'- uuCCCUCUGGgUUCGCuuCGG--UGG-CC- -5'
28988 5' -58 NC_006146.1 + 49286 0.66 0.856098
Target:  5'- uGAGGGAGACggCCGcugcGGUGAAucuGCUcCCGGg -3'
miRNA:   3'- -UUCCCUCUG--GGU----UCGCUU---CGGuGGCC- -5'
28988 5' -58 NC_006146.1 + 5037 0.66 0.84915
Target:  5'- cAGGGAGACCaCGuucuuugacaaguauGCGGggcuGGCCGuuGGa -3'
miRNA:   3'- uUCCCUCUGG-GUu--------------CGCU----UCGGUggCC- -5'
28988 5' -58 NC_006146.1 + 168351 0.66 0.848368
Target:  5'- --cGGGGGCCagcGCGggGUC-CCGGg -3'
miRNA:   3'- uucCCUCUGGguuCGCuuCGGuGGCC- -5'
28988 5' -58 NC_006146.1 + 169283 0.66 0.848368
Target:  5'- --cGGGGGCCagcGCGggGUC-CCGGg -3'
miRNA:   3'- uucCCUCUGGguuCGCuuCGGuGGCC- -5'
28988 5' -58 NC_006146.1 + 99373 0.66 0.848368
Target:  5'- cGGGccgcgcguuGAGGCCCAggAGCGAgucGGCCagggggguGCCGGc -3'
miRNA:   3'- uUCC---------CUCUGGGU--UCGCU---UCGG--------UGGCC- -5'
28988 5' -58 NC_006146.1 + 167419 0.66 0.848368
Target:  5'- --cGGGGGCCagcGCGggGUC-CCGGg -3'
miRNA:   3'- uucCCUCUGGguuCGCuuCGGuGGCC- -5'
28988 5' -58 NC_006146.1 + 110259 0.66 0.848368
Target:  5'- uGAGGGuGcACUCGGG-GGAGCCAUCGc -3'
miRNA:   3'- -UUCCCuC-UGGGUUCgCUUCGGUGGCc -5'
28988 5' -58 NC_006146.1 + 89305 0.66 0.848368
Target:  5'- -cGGGGGugCCAccUGggGCaguGCCGGu -3'
miRNA:   3'- uuCCCUCugGGUucGCuuCGg--UGGCC- -5'
28988 5' -58 NC_006146.1 + 9329 0.66 0.848368
Target:  5'- cGAGGGGGcGCCUggGCGggGgC-CUGa -3'
miRNA:   3'- -UUCCCUC-UGGGuuCGCuuCgGuGGCc -5'
28988 5' -58 NC_006146.1 + 4562 0.66 0.848368
Target:  5'- uGGGGAG-CCC--GCGggGCCgugGCCa- -3'
miRNA:   3'- uUCCCUCuGGGuuCGCuuCGG---UGGcc -5'
28988 5' -58 NC_006146.1 + 170214 0.66 0.848368
Target:  5'- --cGGGGGCCagcGCGggGUC-CCGGg -3'
miRNA:   3'- uucCCUCUGGguuCGCuuCGGuGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.