Results 1 - 20 of 281 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28988 | 5' | -58 | NC_006146.1 | + | 21156 | 1.08 | 0.002375 |
Target: 5'- uAAGGGAGACCCAAGCGAAGCCACCGGa -3' miRNA: 3'- -UUCCCUCUGGGUUCGCUUCGGUGGCC- -5' |
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28988 | 5' | -58 | NC_006146.1 | + | 18078 | 1.08 | 0.002375 |
Target: 5'- uAAGGGAGACCCAAGCGAAGCCACCGGa -3' miRNA: 3'- -UUCCCUCUGGGUUCGCUUCGGUGGCC- -5' |
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28988 | 5' | -58 | NC_006146.1 | + | 24234 | 1.08 | 0.002375 |
Target: 5'- uAAGGGAGACCCAAGCGAAGCCACCGGa -3' miRNA: 3'- -UUCCCUCUGGGUUCGCUUCGGUGGCC- -5' |
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28988 | 5' | -58 | NC_006146.1 | + | 27312 | 1.08 | 0.002375 |
Target: 5'- uAAGGGAGACCCAAGCGAAGCCACCGGa -3' miRNA: 3'- -UUCCCUCUGGGUUCGCUUCGGUGGCC- -5' |
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28988 | 5' | -58 | NC_006146.1 | + | 15000 | 1.07 | 0.002578 |
Target: 5'- uAGGGGAGACCCAAGCGAAGCCACCGGa -3' miRNA: 3'- -UUCCCUCUGGGUUCGCUUCGGUGGCC- -5' |
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28988 | 5' | -58 | NC_006146.1 | + | 168831 | 0.77 | 0.285742 |
Target: 5'- --cGGGGACCCucGCGggGgCACCGGc -3' miRNA: 3'- uucCCUCUGGGuuCGCuuCgGUGGCC- -5' |
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28988 | 5' | -58 | NC_006146.1 | + | 167899 | 0.77 | 0.285742 |
Target: 5'- --cGGGGACCCucGCGggGgCACCGGc -3' miRNA: 3'- uucCCUCUGGGuuCGCuuCgGUGGCC- -5' |
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28988 | 5' | -58 | NC_006146.1 | + | 169763 | 0.77 | 0.285742 |
Target: 5'- --cGGGGACCCucGCGggGgCACCGGc -3' miRNA: 3'- uucCCUCUGGGuuCGCuuCgGUGGCC- -5' |
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28988 | 5' | -58 | NC_006146.1 | + | 103505 | 0.76 | 0.313007 |
Target: 5'- -uGGGGGGCCCGuGGCGuuuGGCCuCCGGu -3' miRNA: 3'- uuCCCUCUGGGU-UCGCu--UCGGuGGCC- -5' |
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28988 | 5' | -58 | NC_006146.1 | + | 55257 | 0.75 | 0.349798 |
Target: 5'- -cGGGcGGCCCGGGCGAAGCgGCUcguGGg -3' miRNA: 3'- uuCCCuCUGGGUUCGCUUCGgUGG---CC- -5' |
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28988 | 5' | -58 | NC_006146.1 | + | 130823 | 0.74 | 0.389563 |
Target: 5'- uAGGGAGGCgCGGGCGGaggcgGGCCaaagagGCCGGg -3' miRNA: 3'- uUCCCUCUGgGUUCGCU-----UCGG------UGGCC- -5' |
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28988 | 5' | -58 | NC_006146.1 | + | 160427 | 0.74 | 0.414801 |
Target: 5'- cGGGGAGGCCCgGGGCGAuacCCGCgGGc -3' miRNA: 3'- uUCCCUCUGGG-UUCGCUuc-GGUGgCC- -5' |
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28988 | 5' | -58 | NC_006146.1 | + | 19544 | 0.73 | 0.477385 |
Target: 5'- cGAGGaGGcGCCCgGAGCGAGGCCgggcagGCCGGg -3' miRNA: 3'- -UUCC-CUcUGGG-UUCGCUUCGG------UGGCC- -5' |
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28988 | 5' | -58 | NC_006146.1 | + | 13389 | 0.73 | 0.477385 |
Target: 5'- cGAGGaGGcGCCCgGAGCGAGGCCgggcagGCCGGg -3' miRNA: 3'- -UUCC-CUcUGGG-UUCGCUUCGG------UGGCC- -5' |
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28988 | 5' | -58 | NC_006146.1 | + | 163171 | 0.73 | 0.459011 |
Target: 5'- gAAGGGGGACCCGGGaaaGggGCgccCGCCa- -3' miRNA: 3'- -UUCCCUCUGGGUUCg--CuuCG---GUGGcc -5' |
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28988 | 5' | -58 | NC_006146.1 | + | 16466 | 0.73 | 0.477385 |
Target: 5'- cGAGGaGGcGCCCgGAGCGAGGCCgggcagGCCGGg -3' miRNA: 3'- -UUCC-CUcUGGG-UUCGCUUCGG------UGGCC- -5' |
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28988 | 5' | -58 | NC_006146.1 | + | 48872 | 0.73 | 0.468152 |
Target: 5'- cGAGGGAGGCC--GGCGAAGCauggGCCaGGa -3' miRNA: 3'- -UUCCCUCUGGguUCGCUUCGg---UGG-CC- -5' |
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28988 | 5' | -58 | NC_006146.1 | + | 22622 | 0.73 | 0.477385 |
Target: 5'- cGAGGaGGcGCCCgGAGCGAGGCCgggcagGCCGGg -3' miRNA: 3'- -UUCC-CUcUGGG-UUCGCUUCGG------UGGCC- -5' |
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28988 | 5' | -58 | NC_006146.1 | + | 69263 | 0.73 | 0.459011 |
Target: 5'- -cGGcGGGGCCCGAGCGcucGGGCUGCCGc -3' miRNA: 3'- uuCC-CUCUGGGUUCGC---UUCGGUGGCc -5' |
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28988 | 5' | -58 | NC_006146.1 | + | 28778 | 0.73 | 0.477385 |
Target: 5'- cGAGGaGGcGCCCgGAGCGAGGCCgggcagGCCGGg -3' miRNA: 3'- -UUCC-CUcUGGG-UUCGCUUCGG------UGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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