miRNA display CGI


Results 1 - 20 of 281 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28988 5' -58 NC_006146.1 + 27312 1.08 0.002375
Target:  5'- uAAGGGAGACCCAAGCGAAGCCACCGGa -3'
miRNA:   3'- -UUCCCUCUGGGUUCGCUUCGGUGGCC- -5'
28988 5' -58 NC_006146.1 + 18078 1.08 0.002375
Target:  5'- uAAGGGAGACCCAAGCGAAGCCACCGGa -3'
miRNA:   3'- -UUCCCUCUGGGUUCGCUUCGGUGGCC- -5'
28988 5' -58 NC_006146.1 + 21156 1.08 0.002375
Target:  5'- uAAGGGAGACCCAAGCGAAGCCACCGGa -3'
miRNA:   3'- -UUCCCUCUGGGUUCGCUUCGGUGGCC- -5'
28988 5' -58 NC_006146.1 + 24234 1.08 0.002375
Target:  5'- uAAGGGAGACCCAAGCGAAGCCACCGGa -3'
miRNA:   3'- -UUCCCUCUGGGUUCGCUUCGGUGGCC- -5'
28988 5' -58 NC_006146.1 + 15000 1.07 0.002578
Target:  5'- uAGGGGAGACCCAAGCGAAGCCACCGGa -3'
miRNA:   3'- -UUCCCUCUGGGUUCGCUUCGGUGGCC- -5'
28988 5' -58 NC_006146.1 + 167899 0.77 0.285742
Target:  5'- --cGGGGACCCucGCGggGgCACCGGc -3'
miRNA:   3'- uucCCUCUGGGuuCGCuuCgGUGGCC- -5'
28988 5' -58 NC_006146.1 + 168831 0.77 0.285742
Target:  5'- --cGGGGACCCucGCGggGgCACCGGc -3'
miRNA:   3'- uucCCUCUGGGuuCGCuuCgGUGGCC- -5'
28988 5' -58 NC_006146.1 + 169763 0.77 0.285742
Target:  5'- --cGGGGACCCucGCGggGgCACCGGc -3'
miRNA:   3'- uucCCUCUGGGuuCGCuuCgGUGGCC- -5'
28988 5' -58 NC_006146.1 + 103505 0.76 0.313007
Target:  5'- -uGGGGGGCCCGuGGCGuuuGGCCuCCGGu -3'
miRNA:   3'- uuCCCUCUGGGU-UCGCu--UCGGuGGCC- -5'
28988 5' -58 NC_006146.1 + 55257 0.75 0.349798
Target:  5'- -cGGGcGGCCCGGGCGAAGCgGCUcguGGg -3'
miRNA:   3'- uuCCCuCUGGGUUCGCUUCGgUGG---CC- -5'
28988 5' -58 NC_006146.1 + 130823 0.74 0.389563
Target:  5'- uAGGGAGGCgCGGGCGGaggcgGGCCaaagagGCCGGg -3'
miRNA:   3'- uUCCCUCUGgGUUCGCU-----UCGG------UGGCC- -5'
28988 5' -58 NC_006146.1 + 160427 0.74 0.414801
Target:  5'- cGGGGAGGCCCgGGGCGAuacCCGCgGGc -3'
miRNA:   3'- uUCCCUCUGGG-UUCGCUuc-GGUGgCC- -5'
28988 5' -58 NC_006146.1 + 92283 0.73 0.432175
Target:  5'- -uGGGAGGCCCAcGCGuccaggcAGCCGuguCCGGg -3'
miRNA:   3'- uuCCCUCUGGGUuCGCu------UCGGU---GGCC- -5'
28988 5' -58 NC_006146.1 + 163171 0.73 0.459011
Target:  5'- gAAGGGGGACCCGGGaaaGggGCgccCGCCa- -3'
miRNA:   3'- -UUCCCUCUGGGUUCg--CuuCG---GUGGcc -5'
28988 5' -58 NC_006146.1 + 69263 0.73 0.459011
Target:  5'- -cGGcGGGGCCCGAGCGcucGGGCUGCCGc -3'
miRNA:   3'- uuCC-CUCUGGGUUCGC---UUCGGUGGCc -5'
28988 5' -58 NC_006146.1 + 48872 0.73 0.468152
Target:  5'- cGAGGGAGGCC--GGCGAAGCauggGCCaGGa -3'
miRNA:   3'- -UUCCCUCUGGguUCGCUUCGg---UGG-CC- -5'
28988 5' -58 NC_006146.1 + 54739 0.73 0.468152
Target:  5'- gAGGGGAGACUCAGGuCGcuGCCGaaGGa -3'
miRNA:   3'- -UUCCCUCUGGGUUC-GCuuCGGUggCC- -5'
28988 5' -58 NC_006146.1 + 22622 0.73 0.477385
Target:  5'- cGAGGaGGcGCCCgGAGCGAGGCCgggcagGCCGGg -3'
miRNA:   3'- -UUCC-CUcUGGG-UUCGCUUCGG------UGGCC- -5'
28988 5' -58 NC_006146.1 + 25700 0.73 0.477385
Target:  5'- cGAGGaGGcGCCCgGAGCGAGGCCgggcagGCCGGg -3'
miRNA:   3'- -UUCC-CUcUGGG-UUCGCUUCGG------UGGCC- -5'
28988 5' -58 NC_006146.1 + 28778 0.73 0.477385
Target:  5'- cGAGGaGGcGCCCgGAGCGAGGCCgggcagGCCGGg -3'
miRNA:   3'- -UUCC-CUcUGGG-UUCGCUUCGG------UGGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.