miRNA display CGI


Results 41 - 60 of 281 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28988 5' -58 NC_006146.1 + 17137 0.71 0.544288
Target:  5'- -cGGGGGACgCuGGCacaccGGGCCGCCGGg -3'
miRNA:   3'- uuCCCUCUGgGuUCGc----UUCGGUGGCC- -5'
28988 5' -58 NC_006146.1 + 137890 0.71 0.554115
Target:  5'- gGGGGGAGGCCgGAgGgGGAGCCgggaugggGCUGGg -3'
miRNA:   3'- -UUCCCUCUGGgUU-CgCUUCGG--------UGGCC- -5'
28988 5' -58 NC_006146.1 + 63293 0.71 0.563994
Target:  5'- cAGGGucuCCUucAGCGAGGCCACCGc -3'
miRNA:   3'- uUCCCucuGGGu-UCGCUUCGGUGGCc -5'
28988 5' -58 NC_006146.1 + 167385 0.71 0.573918
Target:  5'- uGAGGGGGcuCCCGagGGCGggGCCGgggcCUGGc -3'
miRNA:   3'- -UUCCCUCu-GGGU--UCGCuuCGGU----GGCC- -5'
28988 5' -58 NC_006146.1 + 170180 0.71 0.573918
Target:  5'- uGAGGGGGcuCCCGagGGCGggGCCGgggcCUGGc -3'
miRNA:   3'- -UUCCCUCu-GGGU--UCGCuuCGGU----GGCC- -5'
28988 5' -58 NC_006146.1 + 169249 0.71 0.573918
Target:  5'- uGAGGGGGcuCCCGagGGCGggGCCGgggcCUGGc -3'
miRNA:   3'- -UUCCCUCu-GGGU--UCGCuuCGGU----GGCC- -5'
28988 5' -58 NC_006146.1 + 168317 0.71 0.573918
Target:  5'- uGAGGGGGcuCCCGagGGCGggGCCGgggcCUGGc -3'
miRNA:   3'- -UUCCCUCu-GGGU--UCGCuuCGGU----GGCC- -5'
28988 5' -58 NC_006146.1 + 47182 0.71 0.573918
Target:  5'- uGGGGAGAgcccgccgccgcCCCGAGCGccAGGCCcCUGGc -3'
miRNA:   3'- uUCCCUCU------------GGGUUCGC--UUCGGuGGCC- -5'
28988 5' -58 NC_006146.1 + 149951 0.71 0.5779
Target:  5'- uGAGGGGcGCCCAGGCGuugggaguggGGGCCagggccugcaggucgGCCGGa -3'
miRNA:   3'- -UUCCCUcUGGGUUCGC----------UUCGG---------------UGGCC- -5'
28988 5' -58 NC_006146.1 + 134990 0.71 0.583883
Target:  5'- gAAGGGGGACCCGcugcugGGUGggGgUugUGGc -3'
miRNA:   3'- -UUCCCUCUGGGU------UCGCuuCgGugGCC- -5'
28988 5' -58 NC_006146.1 + 112011 0.71 0.583883
Target:  5'- aGAGGGAGACCagucAGCGAAGaCgGCUGu -3'
miRNA:   3'- -UUCCCUCUGGgu--UCGCUUC-GgUGGCc -5'
28988 5' -58 NC_006146.1 + 33319 0.71 0.583883
Target:  5'- cGGGGcagcGGCCC-GGCGAAcCCGCCGGc -3'
miRNA:   3'- uUCCCu---CUGGGuUCGCUUcGGUGGCC- -5'
28988 5' -58 NC_006146.1 + 41600 0.71 0.593881
Target:  5'- -cGGaGAGGCCCGGGgGGcuGGuCCGCUGGg -3'
miRNA:   3'- uuCC-CUCUGGGUUCgCU--UC-GGUGGCC- -5'
28988 5' -58 NC_006146.1 + 128186 0.71 0.593881
Target:  5'- -cGGGAGgcgGCCCAGGgGGGcGCCgcggcGCCGGg -3'
miRNA:   3'- uuCCCUC---UGGGUUCgCUU-CGG-----UGGCC- -5'
28988 5' -58 NC_006146.1 + 33564 0.71 0.593881
Target:  5'- cGGGGcagcGGCCC-GGCGGAcCCACCGGc -3'
miRNA:   3'- uUCCCu---CUGGGuUCGCUUcGGUGGCC- -5'
28988 5' -58 NC_006146.1 + 79350 0.7 0.603907
Target:  5'- uGAGGG-GACCaagGGUGgcGCCGCCGa -3'
miRNA:   3'- -UUCCCuCUGGgu-UCGCuuCGGUGGCc -5'
28988 5' -58 NC_006146.1 + 131220 0.7 0.603907
Target:  5'- gGGGaGGAGGCUgAGGCuGAgcGGCCugCGGg -3'
miRNA:   3'- -UUC-CCUCUGGgUUCG-CU--UCGGugGCC- -5'
28988 5' -58 NC_006146.1 + 16555 0.7 0.613952
Target:  5'- gGAGGcGGACCCGAGgGGcucugGGgCGCCGGu -3'
miRNA:   3'- -UUCCcUCUGGGUUCgCU-----UCgGUGGCC- -5'
28988 5' -58 NC_006146.1 + 13477 0.7 0.613952
Target:  5'- gGAGGcGGACCCGAGgGGcucugGGgCGCCGGu -3'
miRNA:   3'- -UUCCcUCUGGGUUCgCU-----UCgGUGGCC- -5'
28988 5' -58 NC_006146.1 + 19633 0.7 0.613952
Target:  5'- gGAGGcGGACCCGAGgGGcucugGGgCGCCGGu -3'
miRNA:   3'- -UUCCcUCUGGGUUCgCU-----UCgGUGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.