miRNA display CGI


Results 41 - 60 of 281 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28988 5' -58 NC_006146.1 + 75572 0.66 0.824067
Target:  5'- cGGGGAGAauuCCUGuaaUGAGGCCGCCGu -3'
miRNA:   3'- uUCCCUCU---GGGUuc-GCUUCGGUGGCc -5'
28988 5' -58 NC_006146.1 + 131959 0.67 0.819018
Target:  5'- aGGGGGAcuacauauguaauguGACCCuGGUGAauugcaguuuGGCCuCCGGg -3'
miRNA:   3'- -UUCCCU---------------CUGGGuUCGCU----------UCGGuGGCC- -5'
28988 5' -58 NC_006146.1 + 29161 0.67 0.815619
Target:  5'- -uGGGAGGCCCcuguccGCGAgggagAGUCucugGCCGGg -3'
miRNA:   3'- uuCCCUCUGGGuu----CGCU-----UCGG----UGGCC- -5'
28988 5' -58 NC_006146.1 + 13771 0.67 0.815619
Target:  5'- -uGGGAGGCCCcuguccGCGAgggagAGUCucugGCCGGg -3'
miRNA:   3'- uuCCCUCUGGGuu----CGCU-----UCGG----UGGCC- -5'
28988 5' -58 NC_006146.1 + 16849 0.67 0.815619
Target:  5'- -uGGGAGGCCCcuguccGCGAgggagAGUCucugGCCGGg -3'
miRNA:   3'- uuCCCUCUGGGuu----CGCU-----UCGG----UGGCC- -5'
28988 5' -58 NC_006146.1 + 33357 0.67 0.815619
Target:  5'- -cGGGuGGCCgCcGGUGGGuCCGCCGGg -3'
miRNA:   3'- uuCCCuCUGG-GuUCGCUUcGGUGGCC- -5'
28988 5' -58 NC_006146.1 + 55169 0.67 0.815619
Target:  5'- cAGGGGGGugaccgcguCCCAGGCuGcGGCCGCggCGGg -3'
miRNA:   3'- -UUCCCUCu--------GGGUUCG-CuUCGGUG--GCC- -5'
28988 5' -58 NC_006146.1 + 19927 0.67 0.815619
Target:  5'- -uGGGAGGCCCcuguccGCGAgggagAGUCucugGCCGGg -3'
miRNA:   3'- uuCCCUCUGGGuu----CGCU-----UCGG----UGGCC- -5'
28988 5' -58 NC_006146.1 + 23005 0.67 0.815619
Target:  5'- -uGGGAGGCCCcuguccGCGAgggagAGUCucugGCCGGg -3'
miRNA:   3'- uuCCCUCUGGGuu----CGCU-----UCGG----UGGCC- -5'
28988 5' -58 NC_006146.1 + 26083 0.67 0.815619
Target:  5'- -uGGGAGGCCCcuguccGCGAgggagAGUCucugGCCGGg -3'
miRNA:   3'- uuCCCUCUGGGuu----CGCU-----UCGG----UGGCC- -5'
28988 5' -58 NC_006146.1 + 39051 0.67 0.815619
Target:  5'- cAGGcaGGGGCCCu-GUGAauGGUCGCCGGc -3'
miRNA:   3'- uUCC--CUCUGGGuuCGCU--UCGGUGGCC- -5'
28988 5' -58 NC_006146.1 + 168231 0.67 0.80701
Target:  5'- cGGGaGGGGCCggcgccugCAGGgGggGCCGgCGGg -3'
miRNA:   3'- uUCC-CUCUGG--------GUUCgCuuCGGUgGCC- -5'
28988 5' -58 NC_006146.1 + 169163 0.67 0.80701
Target:  5'- cGGGaGGGGCCggcgccugCAGGgGggGCCGgCGGg -3'
miRNA:   3'- uUCC-CUCUGG--------GUUCgCuuCGGUgGCC- -5'
28988 5' -58 NC_006146.1 + 68746 0.67 0.80701
Target:  5'- uGGuGGAGGCCCAGGUGGccaAGCUucaGgCGGu -3'
miRNA:   3'- uUC-CCUCUGGGUUCGCU---UCGG---UgGCC- -5'
28988 5' -58 NC_006146.1 + 167299 0.67 0.80701
Target:  5'- cGGGaGGGGCCggcgccugCAGGgGggGCCGgCGGg -3'
miRNA:   3'- uUCC-CUCUGG--------GUUCgCuuCGGUgGCC- -5'
28988 5' -58 NC_006146.1 + 34128 0.67 0.80701
Target:  5'- cGGGGGAGGaucgcggCCGGGCcucccGGAGCC-CCGGc -3'
miRNA:   3'- -UUCCCUCUg------GGUUCG-----CUUCGGuGGCC- -5'
28988 5' -58 NC_006146.1 + 53332 0.67 0.80701
Target:  5'- -cGaGGAGGCCC-GGCG--GCCGCgGGg -3'
miRNA:   3'- uuC-CCUCUGGGuUCGCuuCGGUGgCC- -5'
28988 5' -58 NC_006146.1 + 113673 0.67 0.80701
Target:  5'- aGAGGuGgcucGGGCCCGGGCccGGCCuCCGGc -3'
miRNA:   3'- -UUCC-C----UCUGGGUUCGcuUCGGuGGCC- -5'
28988 5' -58 NC_006146.1 + 53376 0.67 0.80701
Target:  5'- cAAGGccGGGGCCgAGGCcGAGCCuuCCGGc -3'
miRNA:   3'- -UUCC--CUCUGGgUUCGcUUCGGu-GGCC- -5'
28988 5' -58 NC_006146.1 + 48011 0.67 0.80701
Target:  5'- -cGGGAGGCUuggCGGGgGAGGCaCGgCGGg -3'
miRNA:   3'- uuCCCUCUGG---GUUCgCUUCG-GUgGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.