miRNA display CGI


Results 1 - 20 of 281 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28988 5' -58 NC_006146.1 + 3256 0.67 0.780296
Target:  5'- uAGGG-GACCUGgggacGGCGcAGGCCacgaGCCGGg -3'
miRNA:   3'- uUCCCuCUGGGU-----UCGC-UUCGG----UGGCC- -5'
28988 5' -58 NC_006146.1 + 3943 0.69 0.694159
Target:  5'- uAGGG-GACCCAccccgGGCuGAagGGCCACgCGGc -3'
miRNA:   3'- uUCCCuCUGGGU-----UCG-CU--UCGGUG-GCC- -5'
28988 5' -58 NC_006146.1 + 4562 0.66 0.848368
Target:  5'- uGGGGAG-CCC--GCGggGCCgugGCCa- -3'
miRNA:   3'- uUCCCUCuGGGuuCGCuuCGG---UGGcc -5'
28988 5' -58 NC_006146.1 + 5037 0.66 0.84915
Target:  5'- cAGGGAGACCaCGuucuuugacaaguauGCGGggcuGGCCGuuGGa -3'
miRNA:   3'- uUCCCUCUGG-GUu--------------CGCU----UCGGUggCC- -5'
28988 5' -58 NC_006146.1 + 5800 0.7 0.634076
Target:  5'- --aGGAGugCCAGGUGGcGGCCGUCGGg -3'
miRNA:   3'- uucCCUCugGGUUCGCU-UCGGUGGCC- -5'
28988 5' -58 NC_006146.1 + 9329 0.66 0.848368
Target:  5'- cGAGGGGGcGCCUggGCGggGgC-CUGa -3'
miRNA:   3'- -UUCCCUC-UGGGuuCGCuuCgGuGGCc -5'
28988 5' -58 NC_006146.1 + 10469 0.66 0.843639
Target:  5'- -cGGGAGaaaccuguggcaccuGCgCAAGCGAAGCCuuaGGg -3'
miRNA:   3'- uuCCCUC---------------UGgGUUCGCUUCGGuggCC- -5'
28988 5' -58 NC_006146.1 + 12540 0.68 0.712895
Target:  5'- gGAGGGccugAGGCCCAggGGCGAggggacugaggcgGGCCugaagcCCGGg -3'
miRNA:   3'- -UUCCC----UCUGGGU--UCGCU-------------UCGGu-----GGCC- -5'
28988 5' -58 NC_006146.1 + 12752 0.69 0.664231
Target:  5'- ---aGAGGCCCGAGguUGGAGCCGgCGGg -3'
miRNA:   3'- uuccCUCUGGGUUC--GCUUCGGUgGCC- -5'
28988 5' -58 NC_006146.1 + 12850 0.67 0.777558
Target:  5'- -cGaGGAGGCgCCuggGGCGAGGCUggguggcugggcagGCCGGg -3'
miRNA:   3'- uuC-CCUCUG-GGu--UCGCUUCGG--------------UGGCC- -5'
28988 5' -58 NC_006146.1 + 13389 0.73 0.477385
Target:  5'- cGAGGaGGcGCCCgGAGCGAGGCCgggcagGCCGGg -3'
miRNA:   3'- -UUCC-CUcUGGG-UUCGCUUCGG------UGGCC- -5'
28988 5' -58 NC_006146.1 + 13477 0.7 0.613952
Target:  5'- gGAGGcGGACCCGAGgGGcucugGGgCGCCGGu -3'
miRNA:   3'- -UUCCcUCUGGGUUCgCU-----UCgGUGGCC- -5'
28988 5' -58 NC_006146.1 + 13771 0.67 0.815619
Target:  5'- -uGGGAGGCCCcuguccGCGAgggagAGUCucugGCCGGg -3'
miRNA:   3'- uuCCCUCUGGGuu----CGCU-----UCGG----UGGCC- -5'
28988 5' -58 NC_006146.1 + 13952 0.67 0.798248
Target:  5'- cAGGGGAGAgguaAGGCGGcucucccgGGCUGCCGGg -3'
miRNA:   3'- -UUCCCUCUggg-UUCGCU--------UCGGUGGCC- -5'
28988 5' -58 NC_006146.1 + 14059 0.71 0.544288
Target:  5'- -cGGGGGACgCuGGCacaccGGGCCGCCGGg -3'
miRNA:   3'- uuCCCUCUGgGuUCGc----UUCGGUGGCC- -5'
28988 5' -58 NC_006146.1 + 15000 1.07 0.002578
Target:  5'- uAGGGGAGACCCAAGCGAAGCCACCGGa -3'
miRNA:   3'- -UUCCCUCUGGGUUCGCUUCGGUGGCC- -5'
28988 5' -58 NC_006146.1 + 15619 0.68 0.712895
Target:  5'- gGAGGGccugAGGCCCAggGGCGAggggacugaggcgGGCCugaagcCCGGg -3'
miRNA:   3'- -UUCCC----UCUGGGU--UCGCU-------------UCGGu-----GGCC- -5'
28988 5' -58 NC_006146.1 + 15831 0.69 0.664231
Target:  5'- ---aGAGGCCCGAGguUGGAGCCGgCGGg -3'
miRNA:   3'- uuccCUCUGGGUUC--GCUUCGGUgGCC- -5'
28988 5' -58 NC_006146.1 + 15929 0.68 0.710933
Target:  5'- cGAGGaGGcGCCUggGCGAGGCUggguggcugggcagGCCGGu -3'
miRNA:   3'- -UUCC-CUcUGGGuuCGCUUCGG--------------UGGCC- -5'
28988 5' -58 NC_006146.1 + 16466 0.73 0.477385
Target:  5'- cGAGGaGGcGCCCgGAGCGAGGCCgggcagGCCGGg -3'
miRNA:   3'- -UUCC-CUcUGGG-UUCGCUUCGG------UGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.