miRNA display CGI


Results 21 - 40 of 281 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28988 5' -58 NC_006146.1 + 16555 0.7 0.613952
Target:  5'- gGAGGcGGACCCGAGgGGcucugGGgCGCCGGu -3'
miRNA:   3'- -UUCCcUCUGGGUUCgCU-----UCgGUGGCC- -5'
28988 5' -58 NC_006146.1 + 16849 0.67 0.815619
Target:  5'- -uGGGAGGCCCcuguccGCGAgggagAGUCucugGCCGGg -3'
miRNA:   3'- uuCCCUCUGGGuu----CGCU-----UCGG----UGGCC- -5'
28988 5' -58 NC_006146.1 + 17030 0.67 0.798248
Target:  5'- cAGGGGAGAgguaAGGCGGcucucccgGGCUGCCGGg -3'
miRNA:   3'- -UUCCCUCUggg-UUCGCU--------UCGGUGGCC- -5'
28988 5' -58 NC_006146.1 + 17137 0.71 0.544288
Target:  5'- -cGGGGGACgCuGGCacaccGGGCCGCCGGg -3'
miRNA:   3'- uuCCCUCUGgGuUCGc----UUCGGUGGCC- -5'
28988 5' -58 NC_006146.1 + 18078 1.08 0.002375
Target:  5'- uAAGGGAGACCCAAGCGAAGCCACCGGa -3'
miRNA:   3'- -UUCCCUCUGGGUUCGCUUCGGUGGCC- -5'
28988 5' -58 NC_006146.1 + 18697 0.68 0.712895
Target:  5'- gGAGGGccugAGGCCCAggGGCGAggggacugaggcgGGCCugaagcCCGGg -3'
miRNA:   3'- -UUCCC----UCUGGGU--UCGCU-------------UCGGu-----GGCC- -5'
28988 5' -58 NC_006146.1 + 18909 0.69 0.664231
Target:  5'- ---aGAGGCCCGAGguUGGAGCCGgCGGg -3'
miRNA:   3'- uuccCUCUGGGUUC--GCUUCGGUgGCC- -5'
28988 5' -58 NC_006146.1 + 19006 0.7 0.641121
Target:  5'- cGAGGaGGcGCCUggGCGAGGCUggguggcugggcagGCCGGg -3'
miRNA:   3'- -UUCC-CUcUGGGuuCGCUUCGG--------------UGGCC- -5'
28988 5' -58 NC_006146.1 + 19418 0.67 0.798248
Target:  5'- -uGGGGGACUgaGGGCGgcGCCuuggggcCCGGa -3'
miRNA:   3'- uuCCCUCUGGg-UUCGCuuCGGu------GGCC- -5'
28988 5' -58 NC_006146.1 + 19544 0.73 0.477385
Target:  5'- cGAGGaGGcGCCCgGAGCGAGGCCgggcagGCCGGg -3'
miRNA:   3'- -UUCC-CUcUGGG-UUCGCUUCGG------UGGCC- -5'
28988 5' -58 NC_006146.1 + 19633 0.7 0.613952
Target:  5'- gGAGGcGGACCCGAGgGGcucugGGgCGCCGGu -3'
miRNA:   3'- -UUCCcUCUGGGUUCgCU-----UCgGUGGCC- -5'
28988 5' -58 NC_006146.1 + 19927 0.67 0.815619
Target:  5'- -uGGGAGGCCCcuguccGCGAgggagAGUCucugGCCGGg -3'
miRNA:   3'- uuCCCUCUGGGuu----CGCU-----UCGG----UGGCC- -5'
28988 5' -58 NC_006146.1 + 20108 0.67 0.798248
Target:  5'- cAGGGGAGAgguaAGGCGGcucucccgGGCUGCCGGg -3'
miRNA:   3'- -UUCCCUCUggg-UUCGCU--------UCGGUGGCC- -5'
28988 5' -58 NC_006146.1 + 20215 0.71 0.544288
Target:  5'- -cGGGGGACgCuGGCacaccGGGCCGCCGGg -3'
miRNA:   3'- uuCCCUCUGgGuUCGc----UUCGGUGGCC- -5'
28988 5' -58 NC_006146.1 + 20403 0.68 0.733321
Target:  5'- cAGGGGGACggaGGGCcuGGCCugCGGg -3'
miRNA:   3'- uUCCCUCUGgg-UUCGcuUCGGugGCC- -5'
28988 5' -58 NC_006146.1 + 21156 1.08 0.002375
Target:  5'- uAAGGGAGACCCAAGCGAAGCCACCGGa -3'
miRNA:   3'- -UUCCCUCUGGGUUCGCUUCGGUGGCC- -5'
28988 5' -58 NC_006146.1 + 21775 0.68 0.712895
Target:  5'- gGAGGGccugAGGCCCAggGGCGAggggacugaggcgGGCCugaagcCCGGg -3'
miRNA:   3'- -UUCCC----UCUGGGU--UCGCU-------------UCGGu-----GGCC- -5'
28988 5' -58 NC_006146.1 + 21986 0.69 0.664231
Target:  5'- ---aGAGGCCCGAGguUGGAGCCGgCGGg -3'
miRNA:   3'- uuccCUCUGGGUUC--GCUUCGGUgGCC- -5'
28988 5' -58 NC_006146.1 + 22084 0.7 0.641121
Target:  5'- cGAGGaGGcGCCUggGCGAGGCUggguggcugggcagGCCGGg -3'
miRNA:   3'- -UUCC-CUcUGGGuuCGCUUCGG--------------UGGCC- -5'
28988 5' -58 NC_006146.1 + 22622 0.73 0.477385
Target:  5'- cGAGGaGGcGCCCgGAGCGAGGCCgggcagGCCGGg -3'
miRNA:   3'- -UUCC-CUcUGGG-UUCGCUUCGG------UGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.