miRNA display CGI


Results 1 - 20 of 281 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28988 5' -58 NC_006146.1 + 170673 0.7 0.644139
Target:  5'- cGGGGGAGGCC--AGgGgcGCC-CCGGg -3'
miRNA:   3'- -UUCCCUCUGGguUCgCuuCGGuGGCC- -5'
28988 5' -58 NC_006146.1 + 170583 0.66 0.832346
Target:  5'- -cGGGAGAaugacagCUggGCGuggcGAGCgCGCCGGg -3'
miRNA:   3'- uuCCCUCUg------GGuuCGC----UUCG-GUGGCC- -5'
28988 5' -58 NC_006146.1 + 170424 0.73 0.477385
Target:  5'- gGGGGGGGuCCC--GCGggGCCcggcgcguGCCGGg -3'
miRNA:   3'- -UUCCCUCuGGGuuCGCuuCGG--------UGGCC- -5'
28988 5' -58 NC_006146.1 + 170362 0.66 0.832346
Target:  5'- --uGGAGGCCCGcGGaGAGGCCguguguggagGCCGGg -3'
miRNA:   3'- uucCCUCUGGGU-UCgCUUCGG----------UGGCC- -5'
28988 5' -58 NC_006146.1 + 170282 0.67 0.804397
Target:  5'- gGAGGGuGugCCuGGCGGgggagagggggcagGGCUggcGCCGGg -3'
miRNA:   3'- -UUCCCuCugGGuUCGCU--------------UCGG---UGGCC- -5'
28988 5' -58 NC_006146.1 + 170214 0.66 0.848368
Target:  5'- --cGGGGGCCagcGCGggGUC-CCGGg -3'
miRNA:   3'- uucCCUCUGGguuCGCuuCGGuGGCC- -5'
28988 5' -58 NC_006146.1 + 170180 0.71 0.573918
Target:  5'- uGAGGGGGcuCCCGagGGCGggGCCGgggcCUGGc -3'
miRNA:   3'- -UUCCCUCu-GGGU--UCGCuuCGGU----GGCC- -5'
28988 5' -58 NC_006146.1 + 170095 0.7 0.644139
Target:  5'- -cGGGAGgggccggcGCCgCAGGgGggGCCGgCGGg -3'
miRNA:   3'- uuCCCUC--------UGG-GUUCgCuuCGGUgGCC- -5'
28988 5' -58 NC_006146.1 + 169878 0.68 0.713875
Target:  5'- -cGGGaAGACCCGGGgGcGGGCCACgCGc -3'
miRNA:   3'- uuCCC-UCUGGGUUCgC-UUCGGUG-GCc -5'
28988 5' -58 NC_006146.1 + 169763 0.77 0.285742
Target:  5'- --cGGGGACCCucGCGggGgCACCGGc -3'
miRNA:   3'- uucCCUCUGGGuuCGCuuCgGUGGCC- -5'
28988 5' -58 NC_006146.1 + 169493 0.73 0.477385
Target:  5'- gGGGGGGGuCCC--GCGggGCCcggcgcguGCCGGg -3'
miRNA:   3'- -UUCCCUCuGGGuuCGCuuCGG--------UGGCC- -5'
28988 5' -58 NC_006146.1 + 169431 0.66 0.832346
Target:  5'- --uGGAGGCCCGcGGaGAGGCCguguguggagGCCGGg -3'
miRNA:   3'- uucCCUCUGGGU-UCgCUUCGG----------UGGCC- -5'
28988 5' -58 NC_006146.1 + 169351 0.67 0.804397
Target:  5'- gGAGGGuGugCCuGGCGGgggagagggggcagGGCUggcGCCGGg -3'
miRNA:   3'- -UUCCCuCugGGuUCGCU--------------UCGG---UGGCC- -5'
28988 5' -58 NC_006146.1 + 169283 0.66 0.848368
Target:  5'- --cGGGGGCCagcGCGggGUC-CCGGg -3'
miRNA:   3'- uucCCUCUGGguuCGCuuCGGuGGCC- -5'
28988 5' -58 NC_006146.1 + 169249 0.71 0.573918
Target:  5'- uGAGGGGGcuCCCGagGGCGggGCCGgggcCUGGc -3'
miRNA:   3'- -UUCCCUCu-GGGU--UCGCuuCGGU----GGCC- -5'
28988 5' -58 NC_006146.1 + 169163 0.67 0.80701
Target:  5'- cGGGaGGGGCCggcgccugCAGGgGggGCCGgCGGg -3'
miRNA:   3'- uUCC-CUCUGG--------GUUCgCuuCGGUgGCC- -5'
28988 5' -58 NC_006146.1 + 168946 0.68 0.713875
Target:  5'- -cGGGaAGACCCGGGgGcGGGCCACgCGc -3'
miRNA:   3'- uuCCC-UCUGGGUUCgC-UUCGGUG-GCc -5'
28988 5' -58 NC_006146.1 + 168831 0.77 0.285742
Target:  5'- --cGGGGACCCucGCGggGgCACCGGc -3'
miRNA:   3'- uucCCUCUGGGuuCGCuuCgGUGGCC- -5'
28988 5' -58 NC_006146.1 + 168561 0.73 0.477385
Target:  5'- gGGGGGGGuCCC--GCGggGCCcggcgcguGCCGGg -3'
miRNA:   3'- -UUCCCUCuGGGuuCGCuuCGG--------UGGCC- -5'
28988 5' -58 NC_006146.1 + 168499 0.66 0.832346
Target:  5'- --uGGAGGCCCGcGGaGAGGCCguguguggagGCCGGg -3'
miRNA:   3'- uucCCUCUGGGU-UCgCUUCGG----------UGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.