miRNA display CGI


Results 21 - 40 of 281 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28988 5' -58 NC_006146.1 + 168419 0.67 0.804397
Target:  5'- gGAGGGuGugCCuGGCGGgggagagggggcagGGCUggcGCCGGg -3'
miRNA:   3'- -UUCCCuCugGGuUCGCU--------------UCGG---UGGCC- -5'
28988 5' -58 NC_006146.1 + 168351 0.66 0.848368
Target:  5'- --cGGGGGCCagcGCGggGUC-CCGGg -3'
miRNA:   3'- uucCCUCUGGguuCGCuuCGGuGGCC- -5'
28988 5' -58 NC_006146.1 + 168317 0.71 0.573918
Target:  5'- uGAGGGGGcuCCCGagGGCGggGCCGgggcCUGGc -3'
miRNA:   3'- -UUCCCUCu-GGGU--UCGCuuCGGU----GGCC- -5'
28988 5' -58 NC_006146.1 + 168231 0.67 0.80701
Target:  5'- cGGGaGGGGCCggcgccugCAGGgGggGCCGgCGGg -3'
miRNA:   3'- uUCC-CUCUGG--------GUUCgCuuCGGUgGCC- -5'
28988 5' -58 NC_006146.1 + 168014 0.68 0.713875
Target:  5'- -cGGGaAGACCCGGGgGcGGGCCACgCGc -3'
miRNA:   3'- uuCCC-UCUGGGUUCgC-UUCGGUG-GCc -5'
28988 5' -58 NC_006146.1 + 167899 0.77 0.285742
Target:  5'- --cGGGGACCCucGCGggGgCACCGGc -3'
miRNA:   3'- uucCCUCUGGGuuCGCuuCgGUGGCC- -5'
28988 5' -58 NC_006146.1 + 167629 0.73 0.477385
Target:  5'- gGGGGGGGuCCC--GCGggGCCcggcgcguGCCGGg -3'
miRNA:   3'- -UUCCCUCuGGGuuCGCuuCGG--------UGGCC- -5'
28988 5' -58 NC_006146.1 + 167567 0.66 0.832346
Target:  5'- --uGGAGGCCCGcGGaGAGGCCguguguggagGCCGGg -3'
miRNA:   3'- uucCCUCUGGGU-UCgCUUCGG----------UGGCC- -5'
28988 5' -58 NC_006146.1 + 167487 0.67 0.804397
Target:  5'- gGAGGGuGugCCuGGCGGgggagagggggcagGGCUggcGCCGGg -3'
miRNA:   3'- -UUCCCuCugGGuUCGCU--------------UCGG---UGGCC- -5'
28988 5' -58 NC_006146.1 + 167419 0.66 0.848368
Target:  5'- --cGGGGGCCagcGCGggGUC-CCGGg -3'
miRNA:   3'- uucCCUCUGGguuCGCuuCGGuGGCC- -5'
28988 5' -58 NC_006146.1 + 167385 0.71 0.573918
Target:  5'- uGAGGGGGcuCCCGagGGCGggGCCGgggcCUGGc -3'
miRNA:   3'- -UUCCCUCu-GGGU--UCGCuuCGGU----GGCC- -5'
28988 5' -58 NC_006146.1 + 167299 0.67 0.80701
Target:  5'- cGGGaGGGGCCggcgccugCAGGgGggGCCGgCGGg -3'
miRNA:   3'- uUCC-CUCUGG--------GUUCgCuuCGGUgGCC- -5'
28988 5' -58 NC_006146.1 + 163171 0.73 0.459011
Target:  5'- gAAGGGGGACCCGGGaaaGggGCgccCGCCa- -3'
miRNA:   3'- -UUCCCUCUGGGUUCg--CuuCG---GUGGcc -5'
28988 5' -58 NC_006146.1 + 161281 0.67 0.798248
Target:  5'- uGGGGGAGACCgAGGUcacGAAGCaggaGCUGc -3'
miRNA:   3'- -UUCCCUCUGGgUUCG---CUUCGg---UGGCc -5'
28988 5' -58 NC_006146.1 + 160427 0.74 0.414801
Target:  5'- cGGGGAGGCCCgGGGCGAuacCCGCgGGc -3'
miRNA:   3'- uUCCCUCUGGG-UUCGCUuc-GGUGgCC- -5'
28988 5' -58 NC_006146.1 + 158268 0.72 0.505606
Target:  5'- cGGGGGGACUCuGGCccAGCC-CCGGg -3'
miRNA:   3'- uUCCCUCUGGGuUCGcuUCGGuGGCC- -5'
28988 5' -58 NC_006146.1 + 157833 0.69 0.684222
Target:  5'- cAGGGGcuggugcccaAGACCCAGGCGguGcCCGCCc- -3'
miRNA:   3'- -UUCCC----------UCUGGGUUCGCuuC-GGUGGcc -5'
28988 5' -58 NC_006146.1 + 157126 0.67 0.798248
Target:  5'- cGAGcGGAG-CCCGucAGCGccGCCACCc- -3'
miRNA:   3'- -UUC-CCUCuGGGU--UCGCuuCGGUGGcc -5'
28988 5' -58 NC_006146.1 + 156241 0.68 0.723636
Target:  5'- -cGGGAGGCCgAGGgGGcAGCCagggaGCUGGa -3'
miRNA:   3'- uuCCCUCUGGgUUCgCU-UCGG-----UGGCC- -5'
28988 5' -58 NC_006146.1 + 155575 0.66 0.824067
Target:  5'- -cGGGGcGCCCGccaGggGCaCACCGGg -3'
miRNA:   3'- uuCCCUcUGGGUucgCuuCG-GUGGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.