miRNA display CGI


Results 21 - 40 of 281 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28988 5' -58 NC_006146.1 + 170180 0.71 0.573918
Target:  5'- uGAGGGGGcuCCCGagGGCGggGCCGgggcCUGGc -3'
miRNA:   3'- -UUCCCUCu-GGGU--UCGCuuCGGU----GGCC- -5'
28988 5' -58 NC_006146.1 + 167385 0.71 0.573918
Target:  5'- uGAGGGGGcuCCCGagGGCGggGCCGgggcCUGGc -3'
miRNA:   3'- -UUCCCUCu-GGGU--UCGCuuCGGU----GGCC- -5'
28988 5' -58 NC_006146.1 + 57363 0.73 0.477385
Target:  5'- uGAGGGAGGCUgcGGCGguGgCGCCGGu -3'
miRNA:   3'- -UUCCCUCUGGguUCGCuuCgGUGGCC- -5'
28988 5' -58 NC_006146.1 + 27312 1.08 0.002375
Target:  5'- uAAGGGAGACCCAAGCGAAGCCACCGGa -3'
miRNA:   3'- -UUCCCUCUGGGUUCGCUUCGGUGGCC- -5'
28988 5' -58 NC_006146.1 + 25162 0.7 0.641121
Target:  5'- cGAGGaGGcGCCUggGCGAGGCUggguggcugggcagGCCGGg -3'
miRNA:   3'- -UUCC-CUcUGGGuuCGCUUCGG--------------UGGCC- -5'
28988 5' -58 NC_006146.1 + 79350 0.7 0.603907
Target:  5'- uGAGGG-GACCaagGGUGgcGCCGCCGa -3'
miRNA:   3'- -UUCCCuCUGGgu-UCGCuuCGGUGGCc -5'
28988 5' -58 NC_006146.1 + 44957 0.71 0.544288
Target:  5'- cGGGGAGGcCCCGGGgGAcucgaccgcGGUgGCCGGa -3'
miRNA:   3'- uUCCCUCU-GGGUUCgCU---------UCGgUGGCC- -5'
28988 5' -58 NC_006146.1 + 24234 1.08 0.002375
Target:  5'- uAAGGGAGACCCAAGCGAAGCCACCGGa -3'
miRNA:   3'- -UUCCCUCUGGGUUCGCUUCGGUGGCC- -5'
28988 5' -58 NC_006146.1 + 128186 0.71 0.593881
Target:  5'- -cGGGAGgcgGCCCAGGgGGGcGCCgcggcGCCGGg -3'
miRNA:   3'- uuCCCUC---UGGGUUCgCUU-CGG-----UGGCC- -5'
28988 5' -58 NC_006146.1 + 21156 1.08 0.002375
Target:  5'- uAAGGGAGACCCAAGCGAAGCCACCGGa -3'
miRNA:   3'- -UUCCCUCUGGGUUCGCUUCGGUGGCC- -5'
28988 5' -58 NC_006146.1 + 47182 0.71 0.573918
Target:  5'- uGGGGAGAgcccgccgccgcCCCGAGCGccAGGCCcCUGGc -3'
miRNA:   3'- uUCCCUCU------------GGGUUCGC--UUCGGuGGCC- -5'
28988 5' -58 NC_006146.1 + 149951 0.71 0.5779
Target:  5'- uGAGGGGcGCCCAGGCGuugggaguggGGGCCagggccugcaggucgGCCGGa -3'
miRNA:   3'- -UUCCCUcUGGGUUCGC----------UUCGG---------------UGGCC- -5'
28988 5' -58 NC_006146.1 + 170424 0.73 0.477385
Target:  5'- gGGGGGGGuCCC--GCGggGCCcggcgcguGCCGGg -3'
miRNA:   3'- -UUCCCUCuGGGuuCGCuuCGG--------UGGCC- -5'
28988 5' -58 NC_006146.1 + 167629 0.73 0.477385
Target:  5'- gGGGGGGGuCCC--GCGggGCCcggcgcguGCCGGg -3'
miRNA:   3'- -UUCCCUCuGGGuuCGCuuCGG--------UGGCC- -5'
28988 5' -58 NC_006146.1 + 169763 0.77 0.285742
Target:  5'- --cGGGGACCCucGCGggGgCACCGGc -3'
miRNA:   3'- uucCCUCUGGGuuCGCuuCgGUGGCC- -5'
28988 5' -58 NC_006146.1 + 15000 1.07 0.002578
Target:  5'- uAGGGGAGACCCAAGCGAAGCCACCGGa -3'
miRNA:   3'- -UUCCCUCUGGGUUCGCUUCGGUGGCC- -5'
28988 5' -58 NC_006146.1 + 120005 0.7 0.644139
Target:  5'- --cGGAGGCCCAGGCcgcacccgcGGCCAguCCGGg -3'
miRNA:   3'- uucCCUCUGGGUUCGcu-------UCGGU--GGCC- -5'
28988 5' -58 NC_006146.1 + 28240 0.7 0.641121
Target:  5'- cGAGGaGGcGCCUggGCGAGGCUggguggcugggcagGCCGGg -3'
miRNA:   3'- -UUCC-CUcUGGGuuCGCUUCGG--------------UGGCC- -5'
28988 5' -58 NC_006146.1 + 45395 0.7 0.638102
Target:  5'- gGAGGGguugagcacgucgguGGGCCagcGCGAGGCCccgGCCGGg -3'
miRNA:   3'- -UUCCC---------------UCUGGguuCGCUUCGG---UGGCC- -5'
28988 5' -58 NC_006146.1 + 74739 0.7 0.613952
Target:  5'- -uGGaGGGACCC-AGUGAgccAGCCuCCGGg -3'
miRNA:   3'- uuCC-CUCUGGGuUCGCU---UCGGuGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.