miRNA display CGI


Results 1 - 20 of 281 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28988 5' -58 NC_006146.1 + 26083 0.67 0.815619
Target:  5'- -uGGGAGGCCCcuguccGCGAgggagAGUCucugGCCGGg -3'
miRNA:   3'- uuCCCUCUGGGuu----CGCU-----UCGG----UGGCC- -5'
28988 5' -58 NC_006146.1 + 118340 0.66 0.832346
Target:  5'- gGGGGGAGACCCuguuGGgGGAGUguUCa- -3'
miRNA:   3'- -UUCCCUCUGGGu---UCgCUUCGguGGcc -5'
28988 5' -58 NC_006146.1 + 33877 0.66 0.832346
Target:  5'- cGGGGAGGaagCCGGGUGggGgCCuggggucCCGGg -3'
miRNA:   3'- uUCCCUCUg--GGUUCGCuuC-GGu------GGCC- -5'
28988 5' -58 NC_006146.1 + 111345 0.66 0.824067
Target:  5'- aGAGGGAGGaggCCAGccGCccGGCCACCuGGg -3'
miRNA:   3'- -UUCCCUCUg--GGUU--CGcuUCGGUGG-CC- -5'
28988 5' -58 NC_006146.1 + 131959 0.67 0.819018
Target:  5'- aGGGGGAcuacauauguaauguGACCCuGGUGAauugcaguuuGGCCuCCGGg -3'
miRNA:   3'- -UUCCCU---------------CUGGGuUCGCU----------UCGGuGGCC- -5'
28988 5' -58 NC_006146.1 + 13771 0.67 0.815619
Target:  5'- -uGGGAGGCCCcuguccGCGAgggagAGUCucugGCCGGg -3'
miRNA:   3'- uuCCCUCUGGGuu----CGCU-----UCGG----UGGCC- -5'
28988 5' -58 NC_006146.1 + 16849 0.67 0.815619
Target:  5'- -uGGGAGGCCCcuguccGCGAgggagAGUCucugGCCGGg -3'
miRNA:   3'- uuCCCUCUGGGuu----CGCU-----UCGG----UGGCC- -5'
28988 5' -58 NC_006146.1 + 19927 0.67 0.815619
Target:  5'- -uGGGAGGCCCcuguccGCGAgggagAGUCucugGCCGGg -3'
miRNA:   3'- uuCCCUCUGGGuu----CGCU-----UCGG----UGGCC- -5'
28988 5' -58 NC_006146.1 + 23005 0.67 0.815619
Target:  5'- -uGGGAGGCCCcuguccGCGAgggagAGUCucugGCCGGg -3'
miRNA:   3'- uuCCCUCUGGGuu----CGCU-----UCGG----UGGCC- -5'
28988 5' -58 NC_006146.1 + 139396 0.66 0.840449
Target:  5'- -uGGGGGACCgcGGCu--GCCACCGc -3'
miRNA:   3'- uuCCCUCUGGguUCGcuuCGGUGGCc -5'
28988 5' -58 NC_006146.1 + 10469 0.66 0.843639
Target:  5'- -cGGGAGaaaccuguggcaccuGCgCAAGCGAAGCCuuaGGg -3'
miRNA:   3'- uuCCCUC---------------UGgGUUCGCUUCGGuggCC- -5'
28988 5' -58 NC_006146.1 + 92717 0.66 0.846012
Target:  5'- cAGGGAGGuguccuccucguccUCUGAuaGGAGCCGCUGGg -3'
miRNA:   3'- uUCCCUCU--------------GGGUUcgCUUCGGUGGCC- -5'
28988 5' -58 NC_006146.1 + 146898 0.66 0.863632
Target:  5'- gGAGGGcuGGGCCU--GCGAGGUUcuguugggGCCGGg -3'
miRNA:   3'- -UUCCC--UCUGGGuuCGCUUCGG--------UGGCC- -5'
28988 5' -58 NC_006146.1 + 84628 0.66 0.863632
Target:  5'- uGAGGGGGcaGCCUggGCuuugaGggGCaGCUGGg -3'
miRNA:   3'- -UUCCCUC--UGGGuuCG-----CuuCGgUGGCC- -5'
28988 5' -58 NC_006146.1 + 132929 0.66 0.856098
Target:  5'- --cGGAGaACCgGGGCuacuGggGaCCACCGGg -3'
miRNA:   3'- uucCCUC-UGGgUUCG----CuuC-GGUGGCC- -5'
28988 5' -58 NC_006146.1 + 49286 0.66 0.856098
Target:  5'- uGAGGGAGACggCCGcugcGGUGAAucuGCUcCCGGg -3'
miRNA:   3'- -UUCCCUCUG--GGU----UCGCUU---CGGuGGCC- -5'
28988 5' -58 NC_006146.1 + 122098 0.66 0.856098
Target:  5'- -uGGGAGGCUgGGGCGuuGCCcaGCUuGGg -3'
miRNA:   3'- uuCCCUCUGGgUUCGCuuCGG--UGG-CC- -5'
28988 5' -58 NC_006146.1 + 4562 0.66 0.848368
Target:  5'- uGGGGAG-CCC--GCGggGCCgugGCCa- -3'
miRNA:   3'- uUCCCUCuGGGuuCGCuuCGG---UGGcc -5'
28988 5' -58 NC_006146.1 + 9329 0.66 0.848368
Target:  5'- cGAGGGGGcGCCUggGCGggGgC-CUGa -3'
miRNA:   3'- -UUCCCUC-UGGGuuCGCuuCgGuGGCc -5'
28988 5' -58 NC_006146.1 + 89305 0.66 0.848368
Target:  5'- -cGGGGGugCCAccUGggGCaguGCCGGu -3'
miRNA:   3'- uuCCCUCugGGUucGCuuCGg--UGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.