Results 21 - 40 of 281 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28988 | 5' | -58 | NC_006146.1 | + | 26083 | 0.67 | 0.815619 |
Target: 5'- -uGGGAGGCCCcuguccGCGAgggagAGUCucugGCCGGg -3' miRNA: 3'- uuCCCUCUGGGuu----CGCU-----UCGG----UGGCC- -5' |
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28988 | 5' | -58 | NC_006146.1 | + | 23005 | 0.67 | 0.815619 |
Target: 5'- -uGGGAGGCCCcuguccGCGAgggagAGUCucugGCCGGg -3' miRNA: 3'- uuCCCUCUGGGuu----CGCU-----UCGG----UGGCC- -5' |
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28988 | 5' | -58 | NC_006146.1 | + | 89305 | 0.66 | 0.848368 |
Target: 5'- -cGGGGGugCCAccUGggGCaguGCCGGu -3' miRNA: 3'- uuCCCUCugGGUucGCuuCGg--UGGCC- -5' |
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28988 | 5' | -58 | NC_006146.1 | + | 9329 | 0.66 | 0.848368 |
Target: 5'- cGAGGGGGcGCCUggGCGggGgC-CUGa -3' miRNA: 3'- -UUCCCUC-UGGGuuCGCuuCgGuGGCc -5' |
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28988 | 5' | -58 | NC_006146.1 | + | 4562 | 0.66 | 0.848368 |
Target: 5'- uGGGGAG-CCC--GCGggGCCgugGCCa- -3' miRNA: 3'- uUCCCUCuGGGuuCGCuuCGG---UGGcc -5' |
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28988 | 5' | -58 | NC_006146.1 | + | 122098 | 0.66 | 0.856098 |
Target: 5'- -uGGGAGGCUgGGGCGuuGCCcaGCUuGGg -3' miRNA: 3'- uuCCCUCUGGgUUCGCuuCGG--UGG-CC- -5' |
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28988 | 5' | -58 | NC_006146.1 | + | 49286 | 0.66 | 0.856098 |
Target: 5'- uGAGGGAGACggCCGcugcGGUGAAucuGCUcCCGGg -3' miRNA: 3'- -UUCCCUCUG--GGU----UCGCUU---CGGuGGCC- -5' |
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28988 | 5' | -58 | NC_006146.1 | + | 132929 | 0.66 | 0.856098 |
Target: 5'- --cGGAGaACCgGGGCuacuGggGaCCACCGGg -3' miRNA: 3'- uucCCUC-UGGgUUCG----CuuC-GGUGGCC- -5' |
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28988 | 5' | -58 | NC_006146.1 | + | 84628 | 0.66 | 0.863632 |
Target: 5'- uGAGGGGGcaGCCUggGCuuugaGggGCaGCUGGg -3' miRNA: 3'- -UUCCCUC--UGGGuuCG-----CuuCGgUGGCC- -5' |
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28988 | 5' | -58 | NC_006146.1 | + | 146898 | 0.66 | 0.863632 |
Target: 5'- gGAGGGcuGGGCCU--GCGAGGUUcuguugggGCCGGg -3' miRNA: 3'- -UUCCC--UCUGGGuuCGCUUCGG--------UGGCC- -5' |
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28988 | 5' | -58 | NC_006146.1 | + | 92717 | 0.66 | 0.846012 |
Target: 5'- cAGGGAGGuguccuccucguccUCUGAuaGGAGCCGCUGGg -3' miRNA: 3'- uUCCCUCU--------------GGGUUcgCUUCGGUGGCC- -5' |
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28988 | 5' | -58 | NC_006146.1 | + | 10469 | 0.66 | 0.843639 |
Target: 5'- -cGGGAGaaaccuguggcaccuGCgCAAGCGAAGCCuuaGGg -3' miRNA: 3'- uuCCCUC---------------UGgGUUCGCUUCGGuggCC- -5' |
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28988 | 5' | -58 | NC_006146.1 | + | 19927 | 0.67 | 0.815619 |
Target: 5'- -uGGGAGGCCCcuguccGCGAgggagAGUCucugGCCGGg -3' miRNA: 3'- uuCCCUCUGGGuu----CGCU-----UCGG----UGGCC- -5' |
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28988 | 5' | -58 | NC_006146.1 | + | 16849 | 0.67 | 0.815619 |
Target: 5'- -uGGGAGGCCCcuguccGCGAgggagAGUCucugGCCGGg -3' miRNA: 3'- uuCCCUCUGGGuu----CGCU-----UCGG----UGGCC- -5' |
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28988 | 5' | -58 | NC_006146.1 | + | 13771 | 0.67 | 0.815619 |
Target: 5'- -uGGGAGGCCCcuguccGCGAgggagAGUCucugGCCGGg -3' miRNA: 3'- uuCCCUCUGGGuu----CGCU-----UCGG----UGGCC- -5' |
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28988 | 5' | -58 | NC_006146.1 | + | 131959 | 0.67 | 0.819018 |
Target: 5'- aGGGGGAcuacauauguaauguGACCCuGGUGAauugcaguuuGGCCuCCGGg -3' miRNA: 3'- -UUCCCU---------------CUGGGuUCGCU----------UCGGuGGCC- -5' |
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28988 | 5' | -58 | NC_006146.1 | + | 111345 | 0.66 | 0.824067 |
Target: 5'- aGAGGGAGGaggCCAGccGCccGGCCACCuGGg -3' miRNA: 3'- -UUCCCUCUg--GGUU--CGcuUCGGUGG-CC- -5' |
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28988 | 5' | -58 | NC_006146.1 | + | 33877 | 0.66 | 0.832346 |
Target: 5'- cGGGGAGGaagCCGGGUGggGgCCuggggucCCGGg -3' miRNA: 3'- uUCCCUCUg--GGUUCGCuuC-GGu------GGCC- -5' |
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28988 | 5' | -58 | NC_006146.1 | + | 118340 | 0.66 | 0.832346 |
Target: 5'- gGGGGGAGACCCuguuGGgGGAGUguUCa- -3' miRNA: 3'- -UUCCCUCUGGGu---UCgCUUCGguGGcc -5' |
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28988 | 5' | -58 | NC_006146.1 | + | 139396 | 0.66 | 0.840449 |
Target: 5'- -uGGGGGACCgcGGCu--GCCACCGc -3' miRNA: 3'- uuCCCUCUGGguUCGcuuCGGUGGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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