miRNA display CGI


Results 1 - 20 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28989 5' -61.2 NC_006146.1 + 163165 0.66 0.734307
Target:  5'- ---gGACCCGGGaaaggGGcGCCCGCCa -3'
miRNA:   3'- ggagUUGGGCCCgaag-UC-CGGGCGGa -5'
28989 5' -61.2 NC_006146.1 + 98061 0.66 0.714447
Target:  5'- cCCUCGuuccacgGCCCGGGg-UCGgcGGCCC-CCUc -3'
miRNA:   3'- -GGAGU-------UGGGCCCgaAGU--CCGGGcGGA- -5'
28989 5' -61.2 NC_006146.1 + 40931 0.66 0.705844
Target:  5'- --cCAGCCCcaaGCa-CGGGCCCGCCUg -3'
miRNA:   3'- ggaGUUGGGcc-CGaaGUCCGGGCGGA- -5'
28989 5' -61.2 NC_006146.1 + 49062 0.66 0.696231
Target:  5'- gCCUgGcGCCUGgaggccgacGGCUUCGcGCCCGCCUc -3'
miRNA:   3'- -GGAgU-UGGGC---------CCGAAGUcCGGGCGGA- -5'
28989 5' -61.2 NC_006146.1 + 54913 0.66 0.696231
Target:  5'- cCCUCGGCCgcc-CUgaccCGGGCCCGCCg -3'
miRNA:   3'- -GGAGUUGGgcccGAa---GUCCGGGCGGa -5'
28989 5' -61.2 NC_006146.1 + 160238 0.66 0.689472
Target:  5'- uCCUCugcggcaucaccgugGAgCCGGGCUUCagcaucaacgucaAGGCCCuCCa -3'
miRNA:   3'- -GGAG---------------UUgGGCCCGAAG-------------UCCGGGcGGa -5'
28989 5' -61.2 NC_006146.1 + 53307 0.66 0.686569
Target:  5'- gCUCc-CCCGGGC--CGGGC-CGCCUc -3'
miRNA:   3'- gGAGuuGGGCCCGaaGUCCGgGCGGA- -5'
28989 5' -61.2 NC_006146.1 + 44073 0.66 0.683662
Target:  5'- gCCUgCAugCCGGGaCUggggugguuccaccUCGGGCCgCGCgCUc -3'
miRNA:   3'- -GGA-GUugGGCCC-GA--------------AGUCCGG-GCG-GA- -5'
28989 5' -61.2 NC_006146.1 + 33224 0.66 0.686569
Target:  5'- uCCggggCAG-CCGGGUggccgccggCGGGUCCGCCg -3'
miRNA:   3'- -GGa---GUUgGGCCCGaa-------GUCCGGGCGGa -5'
28989 5' -61.2 NC_006146.1 + 148288 0.66 0.715399
Target:  5'- aCCUCuACCUGGGCg--GGGUCUuuGCCc -3'
miRNA:   3'- -GGAGuUGGGCCCGaagUCCGGG--CGGa -5'
28989 5' -61.2 NC_006146.1 + 155678 0.66 0.715399
Target:  5'- gCCUCAgaggggcugGCCC-GGCUgCAGuCCUGCCUg -3'
miRNA:   3'- -GGAGU---------UGGGcCCGAaGUCcGGGCGGA- -5'
28989 5' -61.2 NC_006146.1 + 44846 0.66 0.715399
Target:  5'- aCC-CAggcGCCCGGGCUU-GGGagaCGCCUc -3'
miRNA:   3'- -GGaGU---UGGGCCCGAAgUCCgg-GCGGA- -5'
28989 5' -61.2 NC_006146.1 + 99140 0.66 0.743644
Target:  5'- gUUUGuCCUGGGCUUCGuGGCgCCGaCCUc -3'
miRNA:   3'- gGAGUuGGGCCCGAAGU-CCG-GGC-GGA- -5'
28989 5' -61.2 NC_006146.1 + 147957 0.66 0.73149
Target:  5'- gCCgggAGCCUGGGCUucgcuugcacagagUCGcucgcGGCCCGCUa -3'
miRNA:   3'- -GGag-UUGGGCCCGA--------------AGU-----CCGGGCGGa -5'
28989 5' -61.2 NC_006146.1 + 113875 0.66 0.72489
Target:  5'- gCCggAGgCCGGGCc-CGGGCCCgaGCCa -3'
miRNA:   3'- -GGagUUgGGCCCGaaGUCCGGG--CGGa -5'
28989 5' -61.2 NC_006146.1 + 168016 0.66 0.72489
Target:  5'- cCCgggaaGACCCGGGgg-CGGGCCaCGCg- -3'
miRNA:   3'- -GGag---UUGGGCCCgaaGUCCGG-GCGga -5'
28989 5' -61.2 NC_006146.1 + 168948 0.66 0.72489
Target:  5'- cCCgggaaGACCCGGGgg-CGGGCCaCGCg- -3'
miRNA:   3'- -GGag---UUGGGCCCgaaGUCCGG-GCGga -5'
28989 5' -61.2 NC_006146.1 + 169880 0.66 0.72489
Target:  5'- cCCgggaaGACCCGGGgg-CGGGCCaCGCg- -3'
miRNA:   3'- -GGag---UUGGGCCCgaaGUCCGG-GCGga -5'
28989 5' -61.2 NC_006146.1 + 45617 0.66 0.72489
Target:  5'- aCUUCAACCCggccgGGGCcUCGcgcuGGCCCaCCg -3'
miRNA:   3'- -GGAGUUGGG-----CCCGaAGU----CCGGGcGGa -5'
28989 5' -61.2 NC_006146.1 + 70399 0.66 0.723944
Target:  5'- cCCUCGgcACCCGGcGCUgCGGGggugggugugggaCCgGCCUc -3'
miRNA:   3'- -GGAGU--UGGGCC-CGAaGUCC-------------GGgCGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.