miRNA display CGI


Results 1 - 20 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28989 5' -61.2 NC_006146.1 + 15391 1.08 0.001338
Target:  5'- gCCUCAACCCGGGCUUCAGGCCCGCCUc -3'
miRNA:   3'- -GGAGUUGGGCCCGAAGUCCGGGCGGA- -5'
28989 5' -61.2 NC_006146.1 + 18469 1.08 0.001338
Target:  5'- gCCUCAACCCGGGCUUCAGGCCCGCCUc -3'
miRNA:   3'- -GGAGUUGGGCCCGAAGUCCGGGCGGA- -5'
28989 5' -61.2 NC_006146.1 + 12312 1.08 0.001338
Target:  5'- gCCUCAACCCGGGCUUCAGGCCCGCCUc -3'
miRNA:   3'- -GGAGUUGGGCCCGAAGUCCGGGCGGA- -5'
28989 5' -61.2 NC_006146.1 + 21547 1.08 0.001338
Target:  5'- gCCUCAACCCGGGCUUCAGGCCCGCCUc -3'
miRNA:   3'- -GGAGUUGGGCCCGAAGUCCGGGCGGA- -5'
28989 5' -61.2 NC_006146.1 + 24625 1.08 0.001338
Target:  5'- gCCUCAACCCGGGCUUCAGGCCCGCCUc -3'
miRNA:   3'- -GGAGUUGGGCCCGAAGUCCGGGCGGA- -5'
28989 5' -61.2 NC_006146.1 + 27703 1.08 0.001338
Target:  5'- gCCUCAACCCGGGCUUCAGGCCCGCCUc -3'
miRNA:   3'- -GGAGUUGGGCCCGAAGUCCGGGCGGA- -5'
28989 5' -61.2 NC_006146.1 + 120192 0.79 0.135275
Target:  5'- gCUCAACgCCGGcUUUCAGGCCUGCCg -3'
miRNA:   3'- gGAGUUG-GGCCcGAAGUCCGGGCGGa -5'
28989 5' -61.2 NC_006146.1 + 95306 0.78 0.168654
Target:  5'- gCUCuACUCGGGCgucUCGGGCgCCGCCUu -3'
miRNA:   3'- gGAGuUGGGCCCGa--AGUCCG-GGCGGA- -5'
28989 5' -61.2 NC_006146.1 + 150322 0.77 0.177012
Target:  5'- uCCUC-GCCCGGGCg-CAGGCCgGCUa -3'
miRNA:   3'- -GGAGuUGGGCCCGaaGUCCGGgCGGa -5'
28989 5' -61.2 NC_006146.1 + 155088 0.77 0.19024
Target:  5'- -gUCAGCCCGGGCg--AGGCCCuGCCc -3'
miRNA:   3'- ggAGUUGGGCCCGaagUCCGGG-CGGa -5'
28989 5' -61.2 NC_006146.1 + 15423 0.77 0.199534
Target:  5'- cCCUCGcCCCuGGGCcUCAGGCCCuCCg -3'
miRNA:   3'- -GGAGUuGGG-CCCGaAGUCCGGGcGGa -5'
28989 5' -61.2 NC_006146.1 + 21579 0.77 0.199534
Target:  5'- cCCUCGcCCCuGGGCcUCAGGCCCuCCg -3'
miRNA:   3'- -GGAGUuGGG-CCCGaAGUCCGGGcGGa -5'
28989 5' -61.2 NC_006146.1 + 12344 0.77 0.199534
Target:  5'- cCCUCGcCCCuGGGCcUCAGGCCCuCCg -3'
miRNA:   3'- -GGAGUuGGG-CCCGaAGUCCGGGcGGa -5'
28989 5' -61.2 NC_006146.1 + 27735 0.77 0.199534
Target:  5'- cCCUCGcCCCuGGGCcUCAGGCCCuCCg -3'
miRNA:   3'- -GGAGUuGGG-CCCGaAGUCCGGGcGGa -5'
28989 5' -61.2 NC_006146.1 + 24657 0.77 0.199534
Target:  5'- cCCUCGcCCCuGGGCcUCAGGCCCuCCg -3'
miRNA:   3'- -GGAGUuGGG-CCCGaAGUCCGGGcGGa -5'
28989 5' -61.2 NC_006146.1 + 18501 0.77 0.199534
Target:  5'- cCCUCGcCCCuGGGCcUCAGGCCCuCCg -3'
miRNA:   3'- -GGAGUuGGG-CCCGaAGUCCGGGcGGa -5'
28989 5' -61.2 NC_006146.1 + 17653 0.76 0.214215
Target:  5'- gCCUCucccGGCCCuagacaGGGCUgucugaCAGGCCCGCCa -3'
miRNA:   3'- -GGAG----UUGGG------CCCGAa-----GUCCGGGCGGa -5'
28989 5' -61.2 NC_006146.1 + 26887 0.76 0.214215
Target:  5'- gCCUCucccGGCCCuagacaGGGCUgucugaCAGGCCCGCCa -3'
miRNA:   3'- -GGAG----UUGGG------CCCGAa-----GUCCGGGCGGa -5'
28989 5' -61.2 NC_006146.1 + 14575 0.76 0.214215
Target:  5'- gCCUCucccGGCCCuagacaGGGCUgucugaCAGGCCCGCCa -3'
miRNA:   3'- -GGAG----UUGGG------CCCGAa-----GUCCGGGCGGa -5'
28989 5' -61.2 NC_006146.1 + 23809 0.76 0.214215
Target:  5'- gCCUCucccGGCCCuagacaGGGCUgucugaCAGGCCCGCCa -3'
miRNA:   3'- -GGAG----UUGGG------CCCGAa-----GUCCGGGCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.