miRNA display CGI


Results 21 - 40 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28989 5' -61.2 NC_006146.1 + 23809 0.76 0.214215
Target:  5'- gCCUCucccGGCCCuagacaGGGCUgucugaCAGGCCCGCCa -3'
miRNA:   3'- -GGAG----UUGGG------CCCGAa-----GUCCGGGCGGa -5'
28989 5' -61.2 NC_006146.1 + 129317 0.75 0.240737
Target:  5'- cCCUgcGCCCGGGCgcccgcucUCAGGCCCucuGCCg -3'
miRNA:   3'- -GGAguUGGGCCCGa-------AGUCCGGG---CGGa -5'
28989 5' -61.2 NC_006146.1 + 23046 0.75 0.24636
Target:  5'- cCCUCAGCuugucuccccaCCGGGUccaUCAGGCCgGCCg -3'
miRNA:   3'- -GGAGUUG-----------GGCCCGa--AGUCCGGgCGGa -5'
28989 5' -61.2 NC_006146.1 + 16891 0.75 0.24636
Target:  5'- cCCUCAGCuugucuccccaCCGGGUccaUCAGGCCgGCCg -3'
miRNA:   3'- -GGAGUUG-----------GGCCCGa--AGUCCGGgCGGa -5'
28989 5' -61.2 NC_006146.1 + 19968 0.75 0.24636
Target:  5'- cCCUCAGCuugucuccccaCCGGGUccaUCAGGCCgGCCg -3'
miRNA:   3'- -GGAGUUG-----------GGCCCGa--AGUCCGGgCGGa -5'
28989 5' -61.2 NC_006146.1 + 26124 0.75 0.24636
Target:  5'- cCCUCAGCuugucuccccaCCGGGUccaUCAGGCCgGCCg -3'
miRNA:   3'- -GGAGUUG-----------GGCCCGa--AGUCCGGgCGGa -5'
28989 5' -61.2 NC_006146.1 + 29202 0.75 0.24636
Target:  5'- cCCUCAGCuugucuccccaCCGGGUccaUCAGGCCgGCCg -3'
miRNA:   3'- -GGAGUUG-----------GGCCCGa--AGUCCGGgCGGa -5'
28989 5' -61.2 NC_006146.1 + 13813 0.75 0.24636
Target:  5'- cCCUCAGCuugucuccccaCCGGGUccaUCAGGCCgGCCg -3'
miRNA:   3'- -GGAGUUG-----------GGCCCGa--AGUCCGGgCGGa -5'
28989 5' -61.2 NC_006146.1 + 65410 0.75 0.257342
Target:  5'- aCCUCuggacGCCCGGGCUcccaGGGCCCccagagcGCCUa -3'
miRNA:   3'- -GGAGu----UGGGCCCGAag--UCCGGG-------CGGA- -5'
28989 5' -61.2 NC_006146.1 + 47454 0.74 0.308675
Target:  5'- aCCUCGucACCCGGGCcagGGGCCaCGUCg -3'
miRNA:   3'- -GGAGU--UGGGCCCGaagUCCGG-GCGGa -5'
28989 5' -61.2 NC_006146.1 + 157688 0.73 0.315529
Target:  5'- gCCUCAGCCaGGuCUgcaAGGCCCGCCc -3'
miRNA:   3'- -GGAGUUGGgCCcGAag-UCCGGGCGGa -5'
28989 5' -61.2 NC_006146.1 + 154901 0.73 0.329578
Target:  5'- gCCUC-GCCCGGGCUgacCGcGUCCGCCc -3'
miRNA:   3'- -GGAGuUGGGCCCGAa--GUcCGGGCGGa -5'
28989 5' -61.2 NC_006146.1 + 22650 0.73 0.336774
Target:  5'- aCCUCAGggugccucCCCGGGUccCAGGCCaGCCg -3'
miRNA:   3'- -GGAGUU--------GGGCCCGaaGUCCGGgCGGa -5'
28989 5' -61.2 NC_006146.1 + 28806 0.73 0.336774
Target:  5'- aCCUCAGggugccucCCCGGGUccCAGGCCaGCCg -3'
miRNA:   3'- -GGAGUU--------GGGCCCGaaGUCCGGgCGGa -5'
28989 5' -61.2 NC_006146.1 + 19572 0.73 0.336774
Target:  5'- aCCUCAGggugccucCCCGGGUccCAGGCCaGCCg -3'
miRNA:   3'- -GGAGUU--------GGGCCCGaaGUCCGGgCGGa -5'
28989 5' -61.2 NC_006146.1 + 13416 0.73 0.336774
Target:  5'- aCCUCAGggugccucCCCGGGUccCAGGCCaGCCg -3'
miRNA:   3'- -GGAGUU--------GGGCCCGaaGUCCGGgCGGa -5'
28989 5' -61.2 NC_006146.1 + 16494 0.73 0.336774
Target:  5'- aCCUCAGggugccucCCCGGGUccCAGGCCaGCCg -3'
miRNA:   3'- -GGAGUU--------GGGCCCGaaGUCCGGgCGGa -5'
28989 5' -61.2 NC_006146.1 + 25728 0.73 0.336774
Target:  5'- aCCUCAGggugccucCCCGGGUccCAGGCCaGCCg -3'
miRNA:   3'- -GGAGUU--------GGGCCCGaaGUCCGGgCGGa -5'
28989 5' -61.2 NC_006146.1 + 146808 0.73 0.343348
Target:  5'- cCCUCGACCCGcgucccaGGCg--AGGCCgCGCCa -3'
miRNA:   3'- -GGAGUUGGGC-------CCGaagUCCGG-GCGGa -5'
28989 5' -61.2 NC_006146.1 + 45968 0.72 0.364385
Target:  5'- cUCUCuGCCCGGGgcagcuccucgcccCgcgugUAGGCCCGCCUg -3'
miRNA:   3'- -GGAGuUGGGCCC--------------Gaa---GUCCGGGCGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.