miRNA display CGI


Results 21 - 40 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28989 5' -61.2 NC_006146.1 + 25360 0.66 0.715399
Target:  5'- uCCUCcgaGACuCCGGGCcccaAGGCggCCGCCc -3'
miRNA:   3'- -GGAG---UUG-GGCCCGaag-UCCG--GGCGGa -5'
28989 5' -61.2 NC_006146.1 + 19204 0.66 0.715399
Target:  5'- uCCUCcgaGACuCCGGGCcccaAGGCggCCGCCc -3'
miRNA:   3'- -GGAG---UUG-GGCCCGaag-UCCG--GGCGGa -5'
28989 5' -61.2 NC_006146.1 + 16126 0.66 0.715399
Target:  5'- uCCUCcgaGACuCCGGGCcccaAGGCggCCGCCc -3'
miRNA:   3'- -GGAG---UUG-GGCCCGaag-UCCG--GGCGGa -5'
28989 5' -61.2 NC_006146.1 + 148157 0.66 0.715399
Target:  5'- -gUCAggGCCCGGGuCUUCucuacGGCCaUGCCc -3'
miRNA:   3'- ggAGU--UGGGCCC-GAAGu----CCGG-GCGGa -5'
28989 5' -61.2 NC_006146.1 + 148288 0.66 0.715399
Target:  5'- aCCUCuACCUGGGCg--GGGUCUuuGCCc -3'
miRNA:   3'- -GGAGuUGGGCCCGaagUCCGGG--CGGa -5'
28989 5' -61.2 NC_006146.1 + 13048 0.66 0.715399
Target:  5'- uCCUCcgaGACuCCGGGCcccaAGGCggCCGCCc -3'
miRNA:   3'- -GGAG---UUG-GGCCCGaag-UCCG--GGCGGa -5'
28989 5' -61.2 NC_006146.1 + 155678 0.66 0.715399
Target:  5'- gCCUCAgaggggcugGCCC-GGCUgCAGuCCUGCCUg -3'
miRNA:   3'- -GGAGU---------UGGGcCCGAaGUCcGGGCGGA- -5'
28989 5' -61.2 NC_006146.1 + 50128 0.66 0.715399
Target:  5'- aCCUCcGCCaGGGaCaUgAGGCgCCGCCa -3'
miRNA:   3'- -GGAGuUGGgCCC-GaAgUCCG-GGCGGa -5'
28989 5' -61.2 NC_006146.1 + 44846 0.66 0.715399
Target:  5'- aCC-CAggcGCCCGGGCUU-GGGagaCGCCUc -3'
miRNA:   3'- -GGaGU---UGGGCCCGAAgUCCgg-GCGGA- -5'
28989 5' -61.2 NC_006146.1 + 131115 0.66 0.715399
Target:  5'- cCCagaAGCCgGGaGCUcCGGGCCCaaGCCUg -3'
miRNA:   3'- -GGag-UUGGgCC-CGAaGUCCGGG--CGGA- -5'
28989 5' -61.2 NC_006146.1 + 98061 0.66 0.714447
Target:  5'- cCCUCGuuccacgGCCCGGGg-UCGgcGGCCC-CCUc -3'
miRNA:   3'- -GGAGU-------UGGGCCCgaAGU--CCGGGcGGA- -5'
28989 5' -61.2 NC_006146.1 + 117540 0.66 0.711585
Target:  5'- cCCUCGggGCCUGGGCcgcaUUCAGGCUguucaggguauggGCCg -3'
miRNA:   3'- -GGAGU--UGGGCCCG----AAGUCCGGg------------CGGa -5'
28989 5' -61.2 NC_006146.1 + 13458 0.66 0.705844
Target:  5'- cCCggCAGCCCGGGU----GGCCCcagagGCCa -3'
miRNA:   3'- -GGa-GUUGGGCCCGaaguCCGGG-----CGGa -5'
28989 5' -61.2 NC_006146.1 + 16536 0.66 0.705844
Target:  5'- cCCggCAGCCCGGGU----GGCCCcagagGCCa -3'
miRNA:   3'- -GGa-GUUGGGCCCGaaguCCGGG-----CGGa -5'
28989 5' -61.2 NC_006146.1 + 62820 0.66 0.705844
Target:  5'- gCCUCucuuguGCCUGuGGCc-CAGGCUgGCCa -3'
miRNA:   3'- -GGAGu-----UGGGC-CCGaaGUCCGGgCGGa -5'
28989 5' -61.2 NC_006146.1 + 40931 0.66 0.705844
Target:  5'- --cCAGCCCcaaGCa-CGGGCCCGCCUg -3'
miRNA:   3'- ggaGUUGGGcc-CGaaGUCCGGGCGGA- -5'
28989 5' -61.2 NC_006146.1 + 19614 0.66 0.705844
Target:  5'- cCCggCAGCCCGGGU----GGCCCcagagGCCa -3'
miRNA:   3'- -GGa-GUUGGGCCCGaaguCCGGG-----CGGa -5'
28989 5' -61.2 NC_006146.1 + 25770 0.66 0.705844
Target:  5'- cCCggCAGCCCGGGU----GGCCCcagagGCCa -3'
miRNA:   3'- -GGa-GUUGGGCCCGaaguCCGGG-----CGGa -5'
28989 5' -61.2 NC_006146.1 + 33085 0.66 0.705844
Target:  5'- gCUCGGCCCugcggcucugGGGCagcCGGGUggCCGCCg -3'
miRNA:   3'- gGAGUUGGG----------CCCGaa-GUCCG--GGCGGa -5'
28989 5' -61.2 NC_006146.1 + 22692 0.66 0.705844
Target:  5'- cCCggCAGCCCGGGU----GGCCCcagagGCCa -3'
miRNA:   3'- -GGa-GUUGGGCCCGaaguCCGGG-----CGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.