miRNA display CGI


Results 41 - 60 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28989 5' -61.2 NC_006146.1 + 25770 0.66 0.705844
Target:  5'- cCCggCAGCCCGGGU----GGCCCcagagGCCa -3'
miRNA:   3'- -GGa-GUUGGGCCCGaaguCCGGG-----CGGa -5'
28989 5' -61.2 NC_006146.1 + 28848 0.66 0.705844
Target:  5'- cCCggCAGCCCGGGU----GGCCCcagagGCCa -3'
miRNA:   3'- -GGa-GUUGGGCCCGaaguCCGGG-----CGGa -5'
28989 5' -61.2 NC_006146.1 + 146950 0.66 0.696231
Target:  5'- aCC-CGACCCGGGgggaaAGucGCCCGCCc -3'
miRNA:   3'- -GGaGUUGGGCCCgaag-UC--CGGGCGGa -5'
28989 5' -61.2 NC_006146.1 + 120883 0.66 0.696231
Target:  5'- gCCUCGACCCcGGCUgcaUCAaccGGaUCGCCUc -3'
miRNA:   3'- -GGAGUUGGGcCCGA---AGU---CCgGGCGGA- -5'
28989 5' -61.2 NC_006146.1 + 49062 0.66 0.696231
Target:  5'- gCCUgGcGCCUGgaggccgacGGCUUCGcGCCCGCCUc -3'
miRNA:   3'- -GGAgU-UGGGC---------CCGAAGUcCGGGCGGA- -5'
28989 5' -61.2 NC_006146.1 + 54913 0.66 0.696231
Target:  5'- cCCUCGGCCgcc-CUgaccCGGGCCCGCCg -3'
miRNA:   3'- -GGAGUUGGgcccGAa---GUCCGGGCGGa -5'
28989 5' -61.2 NC_006146.1 + 160238 0.66 0.689472
Target:  5'- uCCUCugcggcaucaccgugGAgCCGGGCUUCagcaucaacgucaAGGCCCuCCa -3'
miRNA:   3'- -GGAG---------------UUgGGCCCGAAG-------------UCCGGGcGGa -5'
28989 5' -61.2 NC_006146.1 + 33224 0.66 0.686569
Target:  5'- uCCggggCAG-CCGGGUggccgccggCGGGUCCGCCg -3'
miRNA:   3'- -GGa---GUUgGGCCCGaa-------GUCCGGGCGGa -5'
28989 5' -61.2 NC_006146.1 + 42028 0.66 0.686569
Target:  5'- cCCUCugGGCCCGGGCU-CAcGCCgGUg- -3'
miRNA:   3'- -GGAG--UUGGGCCCGAaGUcCGGgCGga -5'
28989 5' -61.2 NC_006146.1 + 53307 0.66 0.686569
Target:  5'- gCUCc-CCCGGGC--CGGGC-CGCCUc -3'
miRNA:   3'- gGAGuuGGGCCCGaaGUCCGgGCGGA- -5'
28989 5' -61.2 NC_006146.1 + 44073 0.66 0.683662
Target:  5'- gCCUgCAugCCGGGaCUggggugguuccaccUCGGGCCgCGCgCUc -3'
miRNA:   3'- -GGA-GUugGGCCC-GA--------------AGUCCGG-GCG-GA- -5'
28989 5' -61.2 NC_006146.1 + 155557 0.67 0.676865
Target:  5'- gUUgGAgCCGGGCUcgcgCGGggcGCCCGCCa -3'
miRNA:   3'- gGAgUUgGGCCCGAa---GUC---CGGGCGGa -5'
28989 5' -61.2 NC_006146.1 + 25119 0.67 0.676865
Target:  5'- gCCU-GGCCUGGGCUgugAGGCCUcgaggGCCg -3'
miRNA:   3'- -GGAgUUGGGCCCGAag-UCCGGG-----CGGa -5'
28989 5' -61.2 NC_006146.1 + 22041 0.67 0.676865
Target:  5'- gCCU-GGCCUGGGCUgugAGGCCUcgaggGCCg -3'
miRNA:   3'- -GGAgUUGGGCCCGAag-UCCGGG-----CGGa -5'
28989 5' -61.2 NC_006146.1 + 18963 0.67 0.676865
Target:  5'- gCCU-GGCCUGGGCUgugAGGCCUcgaggGCCg -3'
miRNA:   3'- -GGAgUUGGGCCCGAag-UCCGGG-----CGGa -5'
28989 5' -61.2 NC_006146.1 + 28197 0.67 0.676865
Target:  5'- gCCU-GGCCUGGGCUgugAGGCCUcgaggGCCg -3'
miRNA:   3'- -GGAgUUGGGCCCGAag-UCCGGG-----CGGa -5'
28989 5' -61.2 NC_006146.1 + 15885 0.67 0.676865
Target:  5'- gCCU-GGCCUGGGCUgugAGGCCUcgaggGCCg -3'
miRNA:   3'- -GGAgUUGGGCCCGAag-UCCGGG-----CGGa -5'
28989 5' -61.2 NC_006146.1 + 12806 0.67 0.676865
Target:  5'- gCCU-GGCCUGGGCUgugAGGCCUcgaggGCCg -3'
miRNA:   3'- -GGAgUUGGGCCCGAag-UCCGGG-----CGGa -5'
28989 5' -61.2 NC_006146.1 + 81849 0.67 0.676865
Target:  5'- gCUCcauACCCGGGCUacUgGGaGCCUcgGCCUc -3'
miRNA:   3'- gGAGu--UGGGCCCGA--AgUC-CGGG--CGGA- -5'
28989 5' -61.2 NC_006146.1 + 58406 0.67 0.676865
Target:  5'- gUCUCGAUCuCGGGU--CuGGCCCGCa- -3'
miRNA:   3'- -GGAGUUGG-GCCCGaaGuCCGGGCGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.