miRNA display CGI


Results 1 - 20 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28989 5' -61.2 NC_006146.1 + 2961 0.69 0.521809
Target:  5'- cCCUgAcAUCCGGGCUU-GGGCCUGCg- -3'
miRNA:   3'- -GGAgU-UGGGCCCGAAgUCCGGGCGga -5'
28989 5' -61.2 NC_006146.1 + 3749 0.69 0.521809
Target:  5'- cCUUCAGCCCGGGgU--GGGUCC-CCUa -3'
miRNA:   3'- -GGAGUUGGGCCCgAagUCCGGGcGGA- -5'
28989 5' -61.2 NC_006146.1 + 3937 0.7 0.475741
Target:  5'- aCC-CAcCCCGGGCUgaaGGGCCaCGCg- -3'
miRNA:   3'- -GGaGUuGGGCCCGAag-UCCGG-GCGga -5'
28989 5' -61.2 NC_006146.1 + 4370 0.68 0.618201
Target:  5'- gCCaCGGCCCcgcGGGCUcccCAGGCCgaCGCCa -3'
miRNA:   3'- -GGaGUUGGG---CCCGAa--GUCCGG--GCGGa -5'
28989 5' -61.2 NC_006146.1 + 5454 0.68 0.569505
Target:  5'- cCCcCGGCUCGGGCgUUGGGUCCGUg- -3'
miRNA:   3'- -GGaGUUGGGCCCGaAGUCCGGGCGga -5'
28989 5' -61.2 NC_006146.1 + 10125 0.68 0.588904
Target:  5'- uUUCAagggcuACCUGGGaugUCAGGCCCuGUCUg -3'
miRNA:   3'- gGAGU------UGGGCCCga-AGUCCGGG-CGGA- -5'
28989 5' -61.2 NC_006146.1 + 12312 1.08 0.001338
Target:  5'- gCCUCAACCCGGGCUUCAGGCCCGCCUc -3'
miRNA:   3'- -GGAGUUGGGCCCGAAGUCCGGGCGGA- -5'
28989 5' -61.2 NC_006146.1 + 12344 0.77 0.199534
Target:  5'- cCCUCGcCCCuGGGCcUCAGGCCCuCCg -3'
miRNA:   3'- -GGAGUuGGG-CCCGaAGUCCGGGcGGa -5'
28989 5' -61.2 NC_006146.1 + 12380 0.71 0.440391
Target:  5'- uCCUcCAGagucaCGGGCUaCAGGCCCuGCCUc -3'
miRNA:   3'- -GGA-GUUgg---GCCCGAaGUCCGGG-CGGA- -5'
28989 5' -61.2 NC_006146.1 + 12806 0.67 0.676865
Target:  5'- gCCU-GGCCUGGGCUgugAGGCCUcgaggGCCg -3'
miRNA:   3'- -GGAgUUGGGCCCGAag-UCCGGG-----CGGa -5'
28989 5' -61.2 NC_006146.1 + 13042 0.69 0.550269
Target:  5'- gCCUCGcCCCaGGCgccuccUCGGGUCCgGCCg -3'
miRNA:   3'- -GGAGUuGGGcCCGa-----AGUCCGGG-CGGa -5'
28989 5' -61.2 NC_006146.1 + 13048 0.66 0.715399
Target:  5'- uCCUCcgaGACuCCGGGCcccaAGGCggCCGCCc -3'
miRNA:   3'- -GGAG---UUG-GGCCCGaag-UCCG--GGCGGa -5'
28989 5' -61.2 NC_006146.1 + 13196 0.69 0.540724
Target:  5'- gCCUCGcUCCGGGCgccuccUCGGGUUCaGCCg -3'
miRNA:   3'- -GGAGUuGGGCCCGa-----AGUCCGGG-CGGa -5'
28989 5' -61.2 NC_006146.1 + 13416 0.73 0.336774
Target:  5'- aCCUCAGggugccucCCCGGGUccCAGGCCaGCCg -3'
miRNA:   3'- -GGAGUU--------GGGCCCGaaGUCCGGgCGGa -5'
28989 5' -61.2 NC_006146.1 + 13458 0.66 0.705844
Target:  5'- cCCggCAGCCCGGGU----GGCCCcagagGCCa -3'
miRNA:   3'- -GGa-GUUGGGCCCGaaguCCGGG-----CGGa -5'
28989 5' -61.2 NC_006146.1 + 13490 0.68 0.569505
Target:  5'- uCCUCAcCCCucuccaGGGCUUCAGaGCCCa--- -3'
miRNA:   3'- -GGAGUuGGG------CCCGAAGUC-CGGGcgga -5'
28989 5' -61.2 NC_006146.1 + 13654 0.7 0.457884
Target:  5'- gCCUCuggggccACCCGGGCUgccggggucccUCcGGCUgGCCUg -3'
miRNA:   3'- -GGAGu------UGGGCCCGA-----------AGuCCGGgCGGA- -5'
28989 5' -61.2 NC_006146.1 + 13708 0.67 0.667129
Target:  5'- uUUCGGCCucuCGGGUccacCAGGCCgGCCg -3'
miRNA:   3'- gGAGUUGG---GCCCGaa--GUCCGGgCGGa -5'
28989 5' -61.2 NC_006146.1 + 13813 0.75 0.24636
Target:  5'- cCCUCAGCuugucuccccaCCGGGUccaUCAGGCCgGCCg -3'
miRNA:   3'- -GGAGUUG-----------GGCCCGa--AGUCCGGgCGGa -5'
28989 5' -61.2 NC_006146.1 + 13934 0.71 0.406583
Target:  5'- gCUCu-CCCGGGCUgccggggucccUCcGGCCgGCCUg -3'
miRNA:   3'- gGAGuuGGGCCCGA-----------AGuCCGGgCGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.