miRNA display CGI


Results 21 - 40 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28989 5' -61.2 NC_006146.1 + 14575 0.76 0.214215
Target:  5'- gCCUCucccGGCCCuagacaGGGCUgucugaCAGGCCCGCCa -3'
miRNA:   3'- -GGAG----UUGGG------CCCGAa-----GUCCGGGCGGa -5'
28989 5' -61.2 NC_006146.1 + 15027 0.7 0.503156
Target:  5'- aCCUUccaGGCCCGGGCcccCAGGUCUcggGCCa -3'
miRNA:   3'- -GGAG---UUGGGCCCGaa-GUCCGGG---CGGa -5'
28989 5' -61.2 NC_006146.1 + 15391 1.08 0.001338
Target:  5'- gCCUCAACCCGGGCUUCAGGCCCGCCUc -3'
miRNA:   3'- -GGAGUUGGGCCCGAAGUCCGGGCGGA- -5'
28989 5' -61.2 NC_006146.1 + 15423 0.77 0.199534
Target:  5'- cCCUCGcCCCuGGGCcUCAGGCCCuCCg -3'
miRNA:   3'- -GGAGUuGGG-CCCGaAGUCCGGGcGGa -5'
28989 5' -61.2 NC_006146.1 + 15459 0.71 0.440391
Target:  5'- uCCUcCAGagucaCGGGCUaCAGGCCCuGCCUc -3'
miRNA:   3'- -GGA-GUUgg---GCCCGAaGUCCGGG-CGGA- -5'
28989 5' -61.2 NC_006146.1 + 15885 0.67 0.676865
Target:  5'- gCCU-GGCCUGGGCUgugAGGCCUcgaggGCCg -3'
miRNA:   3'- -GGAgUUGGGCCCGAag-UCCGGG-----CGGa -5'
28989 5' -61.2 NC_006146.1 + 16120 0.68 0.569505
Target:  5'- gCCUC-GCCCaGGCgccuccUCGGGUCCgGCCg -3'
miRNA:   3'- -GGAGuUGGGcCCGa-----AGUCCGGG-CGGa -5'
28989 5' -61.2 NC_006146.1 + 16126 0.66 0.715399
Target:  5'- uCCUCcgaGACuCCGGGCcccaAGGCggCCGCCc -3'
miRNA:   3'- -GGAG---UUG-GGCCCGaag-UCCG--GGCGGa -5'
28989 5' -61.2 NC_006146.1 + 16274 0.69 0.540724
Target:  5'- gCCUCGcUCCGGGCgccuccUCGGGUUCaGCCg -3'
miRNA:   3'- -GGAGUuGGGCCCGa-----AGUCCGGG-CGGa -5'
28989 5' -61.2 NC_006146.1 + 16494 0.73 0.336774
Target:  5'- aCCUCAGggugccucCCCGGGUccCAGGCCaGCCg -3'
miRNA:   3'- -GGAGUU--------GGGCCCGaaGUCCGGgCGGa -5'
28989 5' -61.2 NC_006146.1 + 16536 0.66 0.705844
Target:  5'- cCCggCAGCCCGGGU----GGCCCcagagGCCa -3'
miRNA:   3'- -GGa-GUUGGGCCCGaaguCCGGG-----CGGa -5'
28989 5' -61.2 NC_006146.1 + 16568 0.68 0.569505
Target:  5'- uCCUCAcCCCucuccaGGGCUUCAGaGCCCa--- -3'
miRNA:   3'- -GGAGUuGGG------CCCGAAGUC-CGGGcgga -5'
28989 5' -61.2 NC_006146.1 + 16732 0.7 0.457884
Target:  5'- gCCUCuggggccACCCGGGCUgccggggucccUCcGGCUgGCCUg -3'
miRNA:   3'- -GGAGu------UGGGCCCGA-----------AGuCCGGgCGGA- -5'
28989 5' -61.2 NC_006146.1 + 16786 0.67 0.667129
Target:  5'- uUUCGGCCucuCGGGUccacCAGGCCgGCCg -3'
miRNA:   3'- gGAGUUGG---GCCCGaa--GUCCGGgCGGa -5'
28989 5' -61.2 NC_006146.1 + 16891 0.75 0.24636
Target:  5'- cCCUCAGCuugucuccccaCCGGGUccaUCAGGCCgGCCg -3'
miRNA:   3'- -GGAGUUG-----------GGCCCGa--AGUCCGGgCGGa -5'
28989 5' -61.2 NC_006146.1 + 17012 0.71 0.406583
Target:  5'- gCUCu-CCCGGGCUgccggggucccUCcGGCCgGCCUg -3'
miRNA:   3'- gGAGuuGGGCCCGA-----------AGuCCGGgCGGA- -5'
28989 5' -61.2 NC_006146.1 + 17653 0.76 0.214215
Target:  5'- gCCUCucccGGCCCuagacaGGGCUgucugaCAGGCCCGCCa -3'
miRNA:   3'- -GGAG----UUGGG------CCCGAa-----GUCCGGGCGGa -5'
28989 5' -61.2 NC_006146.1 + 18105 0.7 0.503156
Target:  5'- aCCUUccaGGCCCGGGCcccCAGGUCUcggGCCa -3'
miRNA:   3'- -GGAG---UUGGGCCCGaa-GUCCGGG---CGGa -5'
28989 5' -61.2 NC_006146.1 + 18469 1.08 0.001338
Target:  5'- gCCUCAACCCGGGCUUCAGGCCCGCCUc -3'
miRNA:   3'- -GGAGUUGGGCCCGAAGUCCGGGCGGA- -5'
28989 5' -61.2 NC_006146.1 + 18501 0.77 0.199534
Target:  5'- cCCUCGcCCCuGGGCcUCAGGCCCuCCg -3'
miRNA:   3'- -GGAGUuGGG-CCCGaAGUCCGGGcGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.