miRNA display CGI


Results 1 - 20 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28989 5' -61.2 NC_006146.1 + 170811 0.7 0.503156
Target:  5'- cCCgggaaGACCCGGGgg-CGGGCCCGgCg -3'
miRNA:   3'- -GGag---UUGGGCCCgaaGUCCGGGCgGa -5'
28989 5' -61.2 NC_006146.1 + 170355 0.68 0.598649
Target:  5'- cCCUCAGCCCccGGCc---GGCgCCGCCg -3'
miRNA:   3'- -GGAGUUGGGc-CCGaaguCCG-GGCGGa -5'
28989 5' -61.2 NC_006146.1 + 169880 0.66 0.72489
Target:  5'- cCCgggaaGACCCGGGgg-CGGGCCaCGCg- -3'
miRNA:   3'- -GGag---UUGGGCCCgaaGUCCGG-GCGga -5'
28989 5' -61.2 NC_006146.1 + 169424 0.68 0.598649
Target:  5'- cCCUCAGCCCccGGCc---GGCgCCGCCg -3'
miRNA:   3'- -GGAGUUGGGc-CCGaaguCCG-GGCGGa -5'
28989 5' -61.2 NC_006146.1 + 168948 0.66 0.72489
Target:  5'- cCCgggaaGACCCGGGgg-CGGGCCaCGCg- -3'
miRNA:   3'- -GGag---UUGGGCCCgaaGUCCGG-GCGga -5'
28989 5' -61.2 NC_006146.1 + 168492 0.68 0.598649
Target:  5'- cCCUCAGCCCccGGCc---GGCgCCGCCg -3'
miRNA:   3'- -GGAGUUGGGc-CCGaaguCCG-GGCGGa -5'
28989 5' -61.2 NC_006146.1 + 168016 0.66 0.72489
Target:  5'- cCCgggaaGACCCGGGgg-CGGGCCaCGCg- -3'
miRNA:   3'- -GGag---UUGGGCCCgaaGUCCGG-GCGga -5'
28989 5' -61.2 NC_006146.1 + 167560 0.68 0.598649
Target:  5'- cCCUCAGCCCccGGCc---GGCgCCGCCg -3'
miRNA:   3'- -GGAGUUGGGc-CCGaaguCCG-GGCGGa -5'
28989 5' -61.2 NC_006146.1 + 163165 0.66 0.734307
Target:  5'- ---gGACCCGGGaaaggGGcGCCCGCCa -3'
miRNA:   3'- ggagUUGGGCCCgaag-UC-CGGGCGGa -5'
28989 5' -61.2 NC_006146.1 + 162581 0.69 0.512448
Target:  5'- aCCgggguCCCGGGCg-CGGGCgCGCCa -3'
miRNA:   3'- -GGaguu-GGGCCCGaaGUCCGgGCGGa -5'
28989 5' -61.2 NC_006146.1 + 162527 0.67 0.657366
Target:  5'- gCUgCAGCCCGGGCUgcagcacCAGGCagaaaUGCUc -3'
miRNA:   3'- gGA-GUUGGGCCCGAa------GUCCGg----GCGGa -5'
28989 5' -61.2 NC_006146.1 + 162338 0.66 0.72489
Target:  5'- gCUgCAGCCCGGGCUgCA-GCUaugagCGCCUu -3'
miRNA:   3'- gGA-GUUGGGCCCGAaGUcCGG-----GCGGA- -5'
28989 5' -61.2 NC_006146.1 + 160238 0.66 0.689472
Target:  5'- uCCUCugcggcaucaccgugGAgCCGGGCUUCagcaucaacgucaAGGCCCuCCa -3'
miRNA:   3'- -GGAG---------------UUgGGCCCGAAG-------------UCCGGGcGGa -5'
28989 5' -61.2 NC_006146.1 + 159245 0.67 0.657366
Target:  5'- cCCUgCuuCUCGGGCUUggggCGGGCCCGaCg -3'
miRNA:   3'- -GGA-GuuGGGCCCGAA----GUCCGGGCgGa -5'
28989 5' -61.2 NC_006146.1 + 157688 0.73 0.315529
Target:  5'- gCCUCAGCCaGGuCUgcaAGGCCCGCCc -3'
miRNA:   3'- -GGAGUUGGgCCcGAag-UCCGGGCGGa -5'
28989 5' -61.2 NC_006146.1 + 156086 0.68 0.566608
Target:  5'- cUCUCuGCCCuguuugccagggagGGGCgccuggccaGGGCCCGCCg -3'
miRNA:   3'- -GGAGuUGGG--------------CCCGaag------UCCGGGCGGa -5'
28989 5' -61.2 NC_006146.1 + 156058 0.68 0.618201
Target:  5'- cCCUCGgccuCCCGcGGCccCGGGCCCGagaCCg -3'
miRNA:   3'- -GGAGUu---GGGC-CCGaaGUCCGGGC---GGa -5'
28989 5' -61.2 NC_006146.1 + 155678 0.66 0.715399
Target:  5'- gCCUCAgaggggcugGCCC-GGCUgCAGuCCUGCCUg -3'
miRNA:   3'- -GGAGU---------UGGGcCCGAaGUCcGGGCGGA- -5'
28989 5' -61.2 NC_006146.1 + 155557 0.67 0.676865
Target:  5'- gUUgGAgCCGGGCUcgcgCGGggcGCCCGCCa -3'
miRNA:   3'- gGAgUUgGGCCCGAa---GUC---CGGGCGGa -5'
28989 5' -61.2 NC_006146.1 + 155342 0.69 0.540724
Target:  5'- uCCUCccaggGACCCGaGacgaAGGCCCGCCUg -3'
miRNA:   3'- -GGAG-----UUGGGCcCgaagUCCGGGCGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.