Results 1 - 20 of 228 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28989 | 5' | -61.2 | NC_006146.1 | + | 12312 | 1.08 | 0.001338 |
Target: 5'- gCCUCAACCCGGGCUUCAGGCCCGCCUc -3' miRNA: 3'- -GGAGUUGGGCCCGAAGUCCGGGCGGA- -5' |
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28989 | 5' | -61.2 | NC_006146.1 | + | 23046 | 0.75 | 0.24636 |
Target: 5'- cCCUCAGCuugucuccccaCCGGGUccaUCAGGCCgGCCg -3' miRNA: 3'- -GGAGUUG-----------GGCCCGa--AGUCCGGgCGGa -5' |
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28989 | 5' | -61.2 | NC_006146.1 | + | 29202 | 0.75 | 0.24636 |
Target: 5'- cCCUCAGCuugucuccccaCCGGGUccaUCAGGCCgGCCg -3' miRNA: 3'- -GGAGUUG-----------GGCCCGa--AGUCCGGgCGGa -5' |
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28989 | 5' | -61.2 | NC_006146.1 | + | 78574 | 0.66 | 0.743644 |
Target: 5'- -aUCAGcugcCCCaGGC--CGGGCCCGCCc -3' miRNA: 3'- ggAGUU----GGGcCCGaaGUCCGGGCGGa -5' |
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28989 | 5' | -61.2 | NC_006146.1 | + | 24625 | 1.08 | 0.001338 |
Target: 5'- gCCUCAACCCGGGCUUCAGGCCCGCCUc -3' miRNA: 3'- -GGAGUUGGGCCCGAAGUCCGGGCGGA- -5' |
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28989 | 5' | -61.2 | NC_006146.1 | + | 27703 | 1.08 | 0.001338 |
Target: 5'- gCCUCAACCCGGGCUUCAGGCCCGCCUc -3' miRNA: 3'- -GGAGUUGGGCCCGAAGUCCGGGCGGA- -5' |
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28989 | 5' | -61.2 | NC_006146.1 | + | 150322 | 0.77 | 0.177012 |
Target: 5'- uCCUC-GCCCGGGCg-CAGGCCgGCUa -3' miRNA: 3'- -GGAGuUGGGCCCGaaGUCCGGgCGGa -5' |
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28989 | 5' | -61.2 | NC_006146.1 | + | 12344 | 0.77 | 0.199534 |
Target: 5'- cCCUCGcCCCuGGGCcUCAGGCCCuCCg -3' miRNA: 3'- -GGAGUuGGG-CCCGaAGUCCGGGcGGa -5' |
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28989 | 5' | -61.2 | NC_006146.1 | + | 21579 | 0.77 | 0.199534 |
Target: 5'- cCCUCGcCCCuGGGCcUCAGGCCCuCCg -3' miRNA: 3'- -GGAGUuGGG-CCCGaAGUCCGGGcGGa -5' |
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28989 | 5' | -61.2 | NC_006146.1 | + | 19968 | 0.75 | 0.24636 |
Target: 5'- cCCUCAGCuugucuccccaCCGGGUccaUCAGGCCgGCCg -3' miRNA: 3'- -GGAGUUG-----------GGCCCGa--AGUCCGGgCGGa -5' |
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28989 | 5' | -61.2 | NC_006146.1 | + | 27735 | 0.77 | 0.199534 |
Target: 5'- cCCUCGcCCCuGGGCcUCAGGCCCuCCg -3' miRNA: 3'- -GGAGUuGGG-CCCGaAGUCCGGGcGGa -5' |
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28989 | 5' | -61.2 | NC_006146.1 | + | 18501 | 0.77 | 0.199534 |
Target: 5'- cCCUCGcCCCuGGGCcUCAGGCCCuCCg -3' miRNA: 3'- -GGAGUuGGG-CCCGaAGUCCGGGcGGa -5' |
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28989 | 5' | -61.2 | NC_006146.1 | + | 15391 | 1.08 | 0.001338 |
Target: 5'- gCCUCAACCCGGGCUUCAGGCCCGCCUc -3' miRNA: 3'- -GGAGUUGGGCCCGAAGUCCGGGCGGA- -5' |
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28989 | 5' | -61.2 | NC_006146.1 | + | 13813 | 0.75 | 0.24636 |
Target: 5'- cCCUCAGCuugucuccccaCCGGGUccaUCAGGCCgGCCg -3' miRNA: 3'- -GGAGUUG-----------GGCCCGa--AGUCCGGgCGGa -5' |
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28989 | 5' | -61.2 | NC_006146.1 | + | 18469 | 1.08 | 0.001338 |
Target: 5'- gCCUCAACCCGGGCUUCAGGCCCGCCUc -3' miRNA: 3'- -GGAGUUGGGCCCGAAGUCCGGGCGGA- -5' |
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28989 | 5' | -61.2 | NC_006146.1 | + | 15423 | 0.77 | 0.199534 |
Target: 5'- cCCUCGcCCCuGGGCcUCAGGCCCuCCg -3' miRNA: 3'- -GGAGUuGGG-CCCGaAGUCCGGGcGGa -5' |
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28989 | 5' | -61.2 | NC_006146.1 | + | 16891 | 0.75 | 0.24636 |
Target: 5'- cCCUCAGCuugucuccccaCCGGGUccaUCAGGCCgGCCg -3' miRNA: 3'- -GGAGUUG-----------GGCCCGa--AGUCCGGgCGGa -5' |
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28989 | 5' | -61.2 | NC_006146.1 | + | 26124 | 0.75 | 0.24636 |
Target: 5'- cCCUCAGCuugucuccccaCCGGGUccaUCAGGCCgGCCg -3' miRNA: 3'- -GGAGUUG-----------GGCCCGa--AGUCCGGgCGGa -5' |
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28989 | 5' | -61.2 | NC_006146.1 | + | 21547 | 1.08 | 0.001338 |
Target: 5'- gCCUCAACCCGGGCUUCAGGCCCGCCUc -3' miRNA: 3'- -GGAGUUGGGCCCGAAGUCCGGGCGGA- -5' |
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28989 | 5' | -61.2 | NC_006146.1 | + | 120192 | 0.79 | 0.135275 |
Target: 5'- gCUCAACgCCGGcUUUCAGGCCUGCCg -3' miRNA: 3'- gGAGUUG-GGCCcGAAGUCCGGGCGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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