miRNA display CGI


Results 21 - 40 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28989 5' -61.2 NC_006146.1 + 16494 0.73 0.336774
Target:  5'- aCCUCAGggugccucCCCGGGUccCAGGCCaGCCg -3'
miRNA:   3'- -GGAGUU--------GGGCCCGaaGUCCGGgCGGa -5'
28989 5' -61.2 NC_006146.1 + 29202 0.75 0.24636
Target:  5'- cCCUCAGCuugucuccccaCCGGGUccaUCAGGCCgGCCg -3'
miRNA:   3'- -GGAGUUG-----------GGCCCGa--AGUCCGGgCGGa -5'
28989 5' -61.2 NC_006146.1 + 18501 0.77 0.199534
Target:  5'- cCCUCGcCCCuGGGCcUCAGGCCCuCCg -3'
miRNA:   3'- -GGAGUuGGG-CCCGaAGUCCGGGcGGa -5'
28989 5' -61.2 NC_006146.1 + 21547 1.08 0.001338
Target:  5'- gCCUCAACCCGGGCUUCAGGCCCGCCUc -3'
miRNA:   3'- -GGAGUUGGGCCCGAAGUCCGGGCGGA- -5'
28989 5' -61.2 NC_006146.1 + 24693 0.71 0.440391
Target:  5'- uCCUcCAGagucaCGGGCUaCAGGCCCuGCCUc -3'
miRNA:   3'- -GGA-GUUgg---GCCCGAaGUCCGGG-CGGA- -5'
28989 5' -61.2 NC_006146.1 + 146808 0.73 0.343348
Target:  5'- cCCUCGACCCGcgucccaGGCg--AGGCCgCGCCa -3'
miRNA:   3'- -GGAGUUGGGC-------CCGaagUCCGG-GCGGa -5'
28989 5' -61.2 NC_006146.1 + 23046 0.75 0.24636
Target:  5'- cCCUCAGCuugucuccccaCCGGGUccaUCAGGCCgGCCg -3'
miRNA:   3'- -GGAGUUG-----------GGCCCGa--AGUCCGGgCGGa -5'
28989 5' -61.2 NC_006146.1 + 18469 1.08 0.001338
Target:  5'- gCCUCAACCCGGGCUUCAGGCCCGCCUc -3'
miRNA:   3'- -GGAGUUGGGCCCGAAGUCCGGGCGGA- -5'
28989 5' -61.2 NC_006146.1 + 28806 0.73 0.336774
Target:  5'- aCCUCAGggugccucCCCGGGUccCAGGCCaGCCg -3'
miRNA:   3'- -GGAGUU--------GGGCCCGaaGUCCGGgCGGa -5'
28989 5' -61.2 NC_006146.1 + 15391 1.08 0.001338
Target:  5'- gCCUCAACCCGGGCUUCAGGCCCGCCUc -3'
miRNA:   3'- -GGAGUUGGGCCCGAAGUCCGGGCGGA- -5'
28989 5' -61.2 NC_006146.1 + 26124 0.75 0.24636
Target:  5'- cCCUCAGCuugucuccccaCCGGGUccaUCAGGCCgGCCg -3'
miRNA:   3'- -GGAGUUG-----------GGCCCGa--AGUCCGGgCGGa -5'
28989 5' -61.2 NC_006146.1 + 19572 0.73 0.336774
Target:  5'- aCCUCAGggugccucCCCGGGUccCAGGCCaGCCg -3'
miRNA:   3'- -GGAGUU--------GGGCCCGaaGUCCGGgCGGa -5'
28989 5' -61.2 NC_006146.1 + 13813 0.75 0.24636
Target:  5'- cCCUCAGCuugucuccccaCCGGGUccaUCAGGCCgGCCg -3'
miRNA:   3'- -GGAGUUG-----------GGCCCGa--AGUCCGGgCGGa -5'
28989 5' -61.2 NC_006146.1 + 21579 0.77 0.199534
Target:  5'- cCCUCGcCCCuGGGCcUCAGGCCCuCCg -3'
miRNA:   3'- -GGAGUuGGG-CCCGaAGUCCGGGcGGa -5'
28989 5' -61.2 NC_006146.1 + 150322 0.77 0.177012
Target:  5'- uCCUC-GCCCGGGCg-CAGGCCgGCUa -3'
miRNA:   3'- -GGAGuUGGGCCCGaaGUCCGGgCGGa -5'
28989 5' -61.2 NC_006146.1 + 24625 1.08 0.001338
Target:  5'- gCCUCAACCCGGGCUUCAGGCCCGCCUc -3'
miRNA:   3'- -GGAGUUGGGCCCGAAGUCCGGGCGGA- -5'
28989 5' -61.2 NC_006146.1 + 93582 0.7 0.493939
Target:  5'- aCCaUCAGCCUGGGCaugCGcGaCCCGCCg -3'
miRNA:   3'- -GG-AGUUGGGCCCGaa-GUcC-GGGCGGa -5'
28989 5' -61.2 NC_006146.1 + 27771 0.71 0.440391
Target:  5'- uCCUcCAGagucaCGGGCUaCAGGCCCuGCCUc -3'
miRNA:   3'- -GGA-GUUgg---GCCCGAaGUCCGGG-CGGA- -5'
28989 5' -61.2 NC_006146.1 + 15459 0.71 0.440391
Target:  5'- uCCUcCAGagucaCGGGCUaCAGGCCCuGCCUc -3'
miRNA:   3'- -GGA-GUUgg---GCCCGAaGUCCGGG-CGGA- -5'
28989 5' -61.2 NC_006146.1 + 45968 0.72 0.364385
Target:  5'- cUCUCuGCCCGGGgcagcuccucgcccCgcgugUAGGCCCGCCUg -3'
miRNA:   3'- -GGAGuUGGGCCC--------------Gaa---GUCCGGGCGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.