miRNA display CGI


Results 41 - 60 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28989 5' -61.2 NC_006146.1 + 21615 0.71 0.440391
Target:  5'- uCCUcCAGagucaCGGGCUaCAGGCCCuGCCUc -3'
miRNA:   3'- -GGA-GUUgg---GCCCGAaGUCCGGG-CGGA- -5'
28989 5' -61.2 NC_006146.1 + 23046 0.75 0.24636
Target:  5'- cCCUCAGCuugucuccccaCCGGGUccaUCAGGCCgGCCg -3'
miRNA:   3'- -GGAGUUG-----------GGCCCGa--AGUCCGGgCGGa -5'
28989 5' -61.2 NC_006146.1 + 18469 1.08 0.001338
Target:  5'- gCCUCAACCCGGGCUUCAGGCCCGCCUc -3'
miRNA:   3'- -GGAGUUGGGCCCGAAGUCCGGGCGGA- -5'
28989 5' -61.2 NC_006146.1 + 18537 0.71 0.440391
Target:  5'- uCCUcCAGagucaCGGGCUaCAGGCCCuGCCUc -3'
miRNA:   3'- -GGA-GUUgg---GCCCGAaGUCCGGG-CGGA- -5'
28989 5' -61.2 NC_006146.1 + 15391 1.08 0.001338
Target:  5'- gCCUCAACCCGGGCUUCAGGCCCGCCUc -3'
miRNA:   3'- -GGAGUUGGGCCCGAAGUCCGGGCGGA- -5'
28989 5' -61.2 NC_006146.1 + 25508 0.69 0.540724
Target:  5'- gCCUCGcUCCGGGCgccuccUCGGGUUCaGCCg -3'
miRNA:   3'- -GGAGUuGGGCCCGa-----AGUCCGGG-CGGa -5'
28989 5' -61.2 NC_006146.1 + 24625 1.08 0.001338
Target:  5'- gCCUCAACCCGGGCUUCAGGCCCGCCUc -3'
miRNA:   3'- -GGAGUUGGGCCCGAAGUCCGGGCGGA- -5'
28989 5' -61.2 NC_006146.1 + 16274 0.69 0.540724
Target:  5'- gCCUCGcUCCGGGCgccuccUCGGGUUCaGCCg -3'
miRNA:   3'- -GGAGUuGGGCCCGa-----AGUCCGGG-CGGa -5'
28989 5' -61.2 NC_006146.1 + 130605 0.69 0.540724
Target:  5'- aCUUUGGCCUGcccGGCcUCuuuGGCCCGCCUc -3'
miRNA:   3'- -GGAGUUGGGC---CCGaAGu--CCGGGCGGA- -5'
28989 5' -61.2 NC_006146.1 + 27339 0.7 0.503156
Target:  5'- aCCUUccaGGCCCGGGCcccCAGGUCUcggGCCa -3'
miRNA:   3'- -GGAG---UUGGGCCCGaa-GUCCGGG---CGGa -5'
28989 5' -61.2 NC_006146.1 + 18105 0.7 0.503156
Target:  5'- aCCUUccaGGCCCGGGCcccCAGGUCUcggGCCa -3'
miRNA:   3'- -GGAG---UUGGGCCCGaa-GUCCGGG---CGGa -5'
28989 5' -61.2 NC_006146.1 + 93582 0.7 0.493939
Target:  5'- aCCaUCAGCCUGGGCaugCGcGaCCCGCCg -3'
miRNA:   3'- -GG-AGUUGGGCCCGaa-GUcC-GGGCGGa -5'
28989 5' -61.2 NC_006146.1 + 27771 0.71 0.440391
Target:  5'- uCCUcCAGagucaCGGGCUaCAGGCCCuGCCUc -3'
miRNA:   3'- -GGA-GUUgg---GCCCGAaGUCCGGG-CGGA- -5'
28989 5' -61.2 NC_006146.1 + 40716 0.72 0.382321
Target:  5'- cCCUCGGgucucaggUCCGGGCaggCGGGCCCGUg- -3'
miRNA:   3'- -GGAGUU--------GGGCCCGaa-GUCCGGGCGga -5'
28989 5' -61.2 NC_006146.1 + 28806 0.73 0.336774
Target:  5'- aCCUCAGggugccucCCCGGGUccCAGGCCaGCCg -3'
miRNA:   3'- -GGAGUU--------GGGCCCGaaGUCCGGgCGGa -5'
28989 5' -61.2 NC_006146.1 + 16494 0.73 0.336774
Target:  5'- aCCUCAGggugccucCCCGGGUccCAGGCCaGCCg -3'
miRNA:   3'- -GGAGUU--------GGGCCCGaaGUCCGGgCGGa -5'
28989 5' -61.2 NC_006146.1 + 29202 0.75 0.24636
Target:  5'- cCCUCAGCuugucuccccaCCGGGUccaUCAGGCCgGCCg -3'
miRNA:   3'- -GGAGUUG-----------GGCCCGa--AGUCCGGgCGGa -5'
28989 5' -61.2 NC_006146.1 + 13813 0.75 0.24636
Target:  5'- cCCUCAGCuugucuccccaCCGGGUccaUCAGGCCgGCCg -3'
miRNA:   3'- -GGAGUUG-----------GGCCCGa--AGUCCGGgCGGa -5'
28989 5' -61.2 NC_006146.1 + 21579 0.77 0.199534
Target:  5'- cCCUCGcCCCuGGGCcUCAGGCCCuCCg -3'
miRNA:   3'- -GGAGUuGGG-CCCGaAGUCCGGGcGGa -5'
28989 5' -61.2 NC_006146.1 + 150322 0.77 0.177012
Target:  5'- uCCUC-GCCCGGGCg-CAGGCCgGCUa -3'
miRNA:   3'- -GGAGuUGGGCCCGaaGUCCGGgCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.