Results 1 - 20 of 228 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28989 | 5' | -61.2 | NC_006146.1 | + | 18963 | 0.67 | 0.676865 |
Target: 5'- gCCU-GGCCUGGGCUgugAGGCCUcgaggGCCg -3' miRNA: 3'- -GGAgUUGGGCCCGAag-UCCGGG-----CGGa -5' |
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28989 | 5' | -61.2 | NC_006146.1 | + | 98061 | 0.66 | 0.714447 |
Target: 5'- cCCUCGuuccacgGCCCGGGg-UCGgcGGCCC-CCUc -3' miRNA: 3'- -GGAGU-------UGGGCCCgaAGU--CCGGGcGGA- -5' |
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28989 | 5' | -61.2 | NC_006146.1 | + | 40931 | 0.66 | 0.705844 |
Target: 5'- --cCAGCCCcaaGCa-CGGGCCCGCCUg -3' miRNA: 3'- ggaGUUGGGcc-CGaaGUCCGGGCGGA- -5' |
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28989 | 5' | -61.2 | NC_006146.1 | + | 49062 | 0.66 | 0.696231 |
Target: 5'- gCCUgGcGCCUGgaggccgacGGCUUCGcGCCCGCCUc -3' miRNA: 3'- -GGAgU-UGGGC---------CCGAAGUcCGGGCGGA- -5' |
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28989 | 5' | -61.2 | NC_006146.1 | + | 54913 | 0.66 | 0.696231 |
Target: 5'- cCCUCGGCCgcc-CUgaccCGGGCCCGCCg -3' miRNA: 3'- -GGAGUUGGgcccGAa---GUCCGGGCGGa -5' |
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28989 | 5' | -61.2 | NC_006146.1 | + | 160238 | 0.66 | 0.689472 |
Target: 5'- uCCUCugcggcaucaccgugGAgCCGGGCUUCagcaucaacgucaAGGCCCuCCa -3' miRNA: 3'- -GGAG---------------UUgGGCCCGAAG-------------UCCGGGcGGa -5' |
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28989 | 5' | -61.2 | NC_006146.1 | + | 53307 | 0.66 | 0.686569 |
Target: 5'- gCUCc-CCCGGGC--CGGGC-CGCCUc -3' miRNA: 3'- gGAGuuGGGCCCGaaGUCCGgGCGGA- -5' |
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28989 | 5' | -61.2 | NC_006146.1 | + | 12806 | 0.67 | 0.676865 |
Target: 5'- gCCU-GGCCUGGGCUgugAGGCCUcgaggGCCg -3' miRNA: 3'- -GGAgUUGGGCCCGAag-UCCGGG-----CGGa -5' |
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28989 | 5' | -61.2 | NC_006146.1 | + | 15885 | 0.67 | 0.676865 |
Target: 5'- gCCU-GGCCUGGGCUgugAGGCCUcgaggGCCg -3' miRNA: 3'- -GGAgUUGGGCCCGAag-UCCGGG-----CGGa -5' |
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28989 | 5' | -61.2 | NC_006146.1 | + | 148288 | 0.66 | 0.715399 |
Target: 5'- aCCUCuACCUGGGCg--GGGUCUuuGCCc -3' miRNA: 3'- -GGAGuUGGGCCCGaagUCCGGG--CGGa -5' |
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28989 | 5' | -61.2 | NC_006146.1 | + | 155678 | 0.66 | 0.715399 |
Target: 5'- gCCUCAgaggggcugGCCC-GGCUgCAGuCCUGCCUg -3' miRNA: 3'- -GGAGU---------UGGGcCCGAaGUCcGGGCGGA- -5' |
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28989 | 5' | -61.2 | NC_006146.1 | + | 44846 | 0.66 | 0.715399 |
Target: 5'- aCC-CAggcGCCCGGGCUU-GGGagaCGCCUc -3' miRNA: 3'- -GGaGU---UGGGCCCGAAgUCCgg-GCGGA- -5' |
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28989 | 5' | -61.2 | NC_006146.1 | + | 99140 | 0.66 | 0.743644 |
Target: 5'- gUUUGuCCUGGGCUUCGuGGCgCCGaCCUc -3' miRNA: 3'- gGAGUuGGGCCCGAAGU-CCG-GGC-GGA- -5' |
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28989 | 5' | -61.2 | NC_006146.1 | + | 147957 | 0.66 | 0.73149 |
Target: 5'- gCCgggAGCCUGGGCUucgcuugcacagagUCGcucgcGGCCCGCUa -3' miRNA: 3'- -GGag-UUGGGCCCGA--------------AGU-----CCGGGCGGa -5' |
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28989 | 5' | -61.2 | NC_006146.1 | + | 113875 | 0.66 | 0.72489 |
Target: 5'- gCCggAGgCCGGGCc-CGGGCCCgaGCCa -3' miRNA: 3'- -GGagUUgGGCCCGaaGUCCGGG--CGGa -5' |
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28989 | 5' | -61.2 | NC_006146.1 | + | 168016 | 0.66 | 0.72489 |
Target: 5'- cCCgggaaGACCCGGGgg-CGGGCCaCGCg- -3' miRNA: 3'- -GGag---UUGGGCCCgaaGUCCGG-GCGga -5' |
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28989 | 5' | -61.2 | NC_006146.1 | + | 168948 | 0.66 | 0.72489 |
Target: 5'- cCCgggaaGACCCGGGgg-CGGGCCaCGCg- -3' miRNA: 3'- -GGag---UUGGGCCCgaaGUCCGG-GCGga -5' |
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28989 | 5' | -61.2 | NC_006146.1 | + | 169880 | 0.66 | 0.72489 |
Target: 5'- cCCgggaaGACCCGGGgg-CGGGCCaCGCg- -3' miRNA: 3'- -GGag---UUGGGCCCgaaGUCCGG-GCGga -5' |
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28989 | 5' | -61.2 | NC_006146.1 | + | 45617 | 0.66 | 0.72489 |
Target: 5'- aCUUCAACCCggccgGGGCcUCGcgcuGGCCCaCCg -3' miRNA: 3'- -GGAGUUGGG-----CCCGaAGU----CCGGGcGGa -5' |
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28989 | 5' | -61.2 | NC_006146.1 | + | 70399 | 0.66 | 0.723944 |
Target: 5'- cCCUCGgcACCCGGcGCUgCGGGggugggugugggaCCgGCCUc -3' miRNA: 3'- -GGAGU--UGGGCC-CGAaGUCC-------------GGgCGGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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