miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2899 3' -53.9 NC_001493.1 + 19617 0.66 0.969009
Target:  5'- cGCUCuccgaGUGuAGUGCGGGGGGUGACgUGGg -3'
miRNA:   3'- -CGAG-----CGCcUCAUGCUCUCUGCUG-ACC- -5'
2899 3' -53.9 NC_001493.1 + 99514 0.66 0.969009
Target:  5'- cGCUCGCGGuca--GGGAucGAUGACgGGu -3'
miRNA:   3'- -CGAGCGCCucaugCUCU--CUGCUGaCC- -5'
2899 3' -53.9 NC_001493.1 + 106210 0.66 0.965898
Target:  5'- cGCUCGCGGuggcccuaucGUugGGGuucAGACGAa-GGa -3'
miRNA:   3'- -CGAGCGCCu---------CAugCUC---UCUGCUgaCC- -5'
2899 3' -53.9 NC_001493.1 + 93777 0.66 0.965898
Target:  5'- uUUUGCGGGGcguacUACGAcGAGgccgugaccACGGCUGGu -3'
miRNA:   3'- cGAGCGCCUC-----AUGCU-CUC---------UGCUGACC- -5'
2899 3' -53.9 NC_001493.1 + 76951 0.66 0.959031
Target:  5'- aGCUCGU---GUACGAGAGAgaGAuaCUGGa -3'
miRNA:   3'- -CGAGCGccuCAUGCUCUCUg-CU--GACC- -5'
2899 3' -53.9 NC_001493.1 + 87279 0.66 0.955264
Target:  5'- cGgUUGCGGAcc-UGAGAGGCGcggaACUGGa -3'
miRNA:   3'- -CgAGCGCCUcauGCUCUCUGC----UGACC- -5'
2899 3' -53.9 NC_001493.1 + 32520 0.67 0.947041
Target:  5'- cGCUCGCGcaGAGggUGA-AGACG-CUGGa -3'
miRNA:   3'- -CGAGCGC--CUCauGCUcUCUGCuGACC- -5'
2899 3' -53.9 NC_001493.1 + 111815 0.67 0.942119
Target:  5'- uGCUCGCGGguacgcccgaagAGUcggaccccuccgaGCGAGAccucGACGACUa- -3'
miRNA:   3'- -CGAGCGCC------------UCA-------------UGCUCU----CUGCUGAcc -5'
2899 3' -53.9 NC_001493.1 + 86609 0.67 0.937878
Target:  5'- -gUCGUGGGaUAaaauaGGGGGGCGAUUGGu -3'
miRNA:   3'- cgAGCGCCUcAUg----CUCUCUGCUGACC- -5'
2899 3' -53.9 NC_001493.1 + 36225 0.69 0.883426
Target:  5'- gGCcugCGCGGGGgugcucagugggGCGGGuugcgcGGACGAUUGGg -3'
miRNA:   3'- -CGa--GCGCCUCa-----------UGCUC------UCUGCUGACC- -5'
2899 3' -53.9 NC_001493.1 + 28072 0.69 0.877759
Target:  5'- uGCUCGgGGAGUcAC-AGGGAgGACUaucGGa -3'
miRNA:   3'- -CGAGCgCCUCA-UGcUCUCUgCUGA---CC- -5'
2899 3' -53.9 NC_001493.1 + 95581 0.71 0.787817
Target:  5'- aGC-CGCGGuGauaucaucacaccggGCGAGAGACGGgUGGu -3'
miRNA:   3'- -CGaGCGCCuCa--------------UGCUCUCUGCUgACC- -5'
2899 3' -53.9 NC_001493.1 + 110583 0.71 0.768233
Target:  5'- uGCUCGcCGcGAuGUgugGCGGGGGgugGCGACUGGg -3'
miRNA:   3'- -CGAGC-GC-CU-CA---UGCUCUC---UGCUGACC- -5'
2899 3' -53.9 NC_001493.1 + 130548 0.72 0.719599
Target:  5'- aGCUCG-GGGGUGCGAucGAGgccGCGGgUGGa -3'
miRNA:   3'- -CGAGCgCCUCAUGCU--CUC---UGCUgACC- -5'
2899 3' -53.9 NC_001493.1 + 14993 0.72 0.719599
Target:  5'- aGCUCG-GGGGUGCGAucGAGgccGCGGgUGGa -3'
miRNA:   3'- -CGAGCgCCUCAUGCU--CUC---UGCUgACC- -5'
2899 3' -53.9 NC_001493.1 + 115696 0.74 0.597293
Target:  5'- --gCGUGGGGgugGCGAGGGugGGuCUGGa -3'
miRNA:   3'- cgaGCGCCUCa--UGCUCUCugCU-GACC- -5'
2899 3' -53.9 NC_001493.1 + 82935 0.81 0.283158
Target:  5'- aCUCGCGGGGUguACGGGGGGCGGCg-- -3'
miRNA:   3'- cGAGCGCCUCA--UGCUCUCUGCUGacc -5'
2899 3' -53.9 NC_001493.1 + 14198 0.83 0.217194
Target:  5'- aGCUCGCGGGGgACGAGgacgucgucGGGCGACUGa -3'
miRNA:   3'- -CGAGCGCCUCaUGCUC---------UCUGCUGACc -5'
2899 3' -53.9 NC_001493.1 + 129752 0.83 0.217194
Target:  5'- aGCUCGCGGGGgACGAGgacgucgucGGGCGACUGa -3'
miRNA:   3'- -CGAGCGCCUCaUGCUC---------UCUGCUGACc -5'
2899 3' -53.9 NC_001493.1 + 28240 1.13 0.002582
Target:  5'- uGCUCGCGGAGUACGAGAGACGACUGGg -3'
miRNA:   3'- -CGAGCGCCUCAUGCUCUCUGCUGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.