miRNA display CGI


Results 41 - 60 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2899 5' -57.3 NC_001493.1 + 119725 0.68 0.727283
Target:  5'- -gCCGGUCaccgugcucUCCACCUGC-ACCACa -3'
miRNA:   3'- caGGCCAGcu-------AGGUGGGCGuUGGUGg -5'
2899 5' -57.3 NC_001493.1 + 37701 0.68 0.763666
Target:  5'- -cCCGGUCGAcgaccccUCCAucCCCGCGcacaugcgcaaguACCAgCa -3'
miRNA:   3'- caGGCCAGCU-------AGGU--GGGCGU-------------UGGUgG- -5'
2899 5' -57.3 NC_001493.1 + 109189 0.68 0.773912
Target:  5'- -aCCGGguucUCGGUCCaauggacaacgacGCCCuggaCAGCCGCCg -3'
miRNA:   3'- caGGCC----AGCUAGG-------------UGGGc---GUUGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 102833 0.68 0.774836
Target:  5'- aUCCGGUCGcAUCuCGCUC---ACCACCc -3'
miRNA:   3'- cAGGCCAGC-UAG-GUGGGcguUGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 72234 0.68 0.734086
Target:  5'- gGUCUGGUguaauucacgagcaUGAUCCGCguCUGCuuCCACCu -3'
miRNA:   3'- -CAGGCCA--------------GCUAGGUG--GGCGuuGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 70810 0.68 0.774836
Target:  5'- -aCCGcGUCGuUCCACgCGaCGACCAUUa -3'
miRNA:   3'- caGGC-CAGCuAGGUGgGC-GUUGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 87193 0.68 0.774836
Target:  5'- -aCCGaGUauGUCaccaCACCCGCAgcGCCACCg -3'
miRNA:   3'- caGGC-CAgcUAG----GUGGGCGU--UGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 54889 0.68 0.73699
Target:  5'- -cCCGGUCag-CgC-CCCGCcGCCACCa -3'
miRNA:   3'- caGGCCAGcuaG-GuGGGCGuUGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 91517 0.68 0.746608
Target:  5'- -aCCGGUUccUCCACCgGUuccuCCACCu -3'
miRNA:   3'- caGGCCAGcuAGGUGGgCGuu--GGUGG- -5'
2899 5' -57.3 NC_001493.1 + 1630 0.68 0.746608
Target:  5'- --aCGGUagGGUUCACgCCGUAGCUACCc -3'
miRNA:   3'- cagGCCAg-CUAGGUG-GGCGUUGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 117184 0.68 0.746608
Target:  5'- --aCGGUagGGUUCACgCCGUAGCUACCc -3'
miRNA:   3'- cagGCCAg-CUAGGUG-GGCGUUGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 71499 0.68 0.76554
Target:  5'- aUCCGGcgguaCGGUCCACggCgGUAACCACa -3'
miRNA:   3'- cAGGCCa----GCUAGGUG--GgCGUUGGUGg -5'
2899 5' -57.3 NC_001493.1 + 71222 0.68 0.774836
Target:  5'- -gCCGGUUGAugguaaucguUCCguggggACCgGCGACCAUCu -3'
miRNA:   3'- caGGCCAGCU----------AGG------UGGgCGUUGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 95910 0.68 0.774836
Target:  5'- -gCCGG-CGGUCCGCUCGacuACUACg -3'
miRNA:   3'- caGGCCaGCUAGGUGGGCgu-UGGUGg -5'
2899 5' -57.3 NC_001493.1 + 37035 0.68 0.774836
Target:  5'- -aCCGGcggggCGGaCCGCCaGCGACCACa -3'
miRNA:   3'- caGGCCa----GCUaGGUGGgCGUUGGUGg -5'
2899 5' -57.3 NC_001493.1 + 23849 0.69 0.716513
Target:  5'- -aCUGGUCGGUcaugaucCCGCCCGgGAUC-CCa -3'
miRNA:   3'- caGGCCAGCUA-------GGUGGGCgUUGGuGG- -5'
2899 5' -57.3 NC_001493.1 + 42077 0.69 0.697715
Target:  5'- -cUCGGUCGugaccauggCCAUCCGUcgcuuGGCCACCu -3'
miRNA:   3'- caGGCCAGCua-------GGUGGGCG-----UUGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 3193 0.69 0.697715
Target:  5'- ---aGGUCGAggaugCCAucCCCGCGGCCGuCCc -3'
miRNA:   3'- caggCCAGCUa----GGU--GGGCGUUGGU-GG- -5'
2899 5' -57.3 NC_001493.1 + 91055 0.69 0.67772
Target:  5'- aUgUGGgagCGAUUC-UCCGCGGCCGCCa -3'
miRNA:   3'- cAgGCCa--GCUAGGuGGGCGUUGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 15169 0.69 0.67772
Target:  5'- --aCGG-CGAccuuUCCACCCGCGGCCucgaucgcACCc -3'
miRNA:   3'- cagGCCaGCU----AGGUGGGCGUUGG--------UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.