Results 81 - 85 of 85 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
|
P value |
| Predicted miRNA align pattern | |||||||
| 2899 | 5' | -57.3 | NC_001493.1 | + | 105978 | 0.66 | 0.867058 |
|
Target: 5'- -gCgGGUCGGaagUCACCCGUcACCuCCa -3' miRNA: 3'- caGgCCAGCUa--GGUGGGCGuUGGuGG- -5' |
|||||||
| 2899 | 5' | -57.3 | NC_001493.1 | + | 30511 | 0.66 | 0.867058 |
|
Target: 5'- uGUCCGGggCGAUCC-CCCuu-GCCGUCa -3' miRNA: 3'- -CAGGCCa-GCUAGGuGGGcguUGGUGG- -5' |
|||||||
| 2899 | 5' | -57.3 | NC_001493.1 | + | 130004 | 0.66 | 0.859575 |
|
Target: 5'- gGUCCGGgaaGAaaguggCACCCGCGcCCAUCc -3' miRNA: 3'- -CAGGCCag-CUag----GUGGGCGUuGGUGG- -5' |
|||||||
| 2899 | 5' | -57.3 | NC_001493.1 | + | 9885 | 0.66 | 0.835947 |
|
Target: 5'- -gCCGGUCGAgCCGCagcaGCAggaggggguACCGCUa -3' miRNA: 3'- caGGCCAGCUaGGUGgg--CGU---------UGGUGG- -5' |
|||||||
| 2899 | 5' | -57.3 | NC_001493.1 | + | 87620 | 0.65 | 0.871449 |
|
Target: 5'- cGUCCGcgccgguagugcccGUCGAgucuucggaugacUCCGCCCGUggAGCCGgCu -3' miRNA: 3'- -CAGGC--------------CAGCU-------------AGGUGGGCG--UUGGUgG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home