Results 81 - 85 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2899 | 5' | -57.3 | NC_001493.1 | + | 31640 | 0.73 | 0.442941 |
Target: 5'- uUCgaGGUacCGAUCCGCguuccucaCCGCGACCACCg -3' miRNA: 3'- cAGg-CCA--GCUAGGUG--------GGCGUUGGUGG- -5' |
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2899 | 5' | -57.3 | NC_001493.1 | + | 92812 | 0.75 | 0.350987 |
Target: 5'- cUCCGGUCGAgcucgccCCACCCGaCGGCguCCc -3' miRNA: 3'- cAGGCCAGCUa------GGUGGGC-GUUGguGG- -5' |
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2899 | 5' | -57.3 | NC_001493.1 | + | 73017 | 0.76 | 0.343329 |
Target: 5'- aGUCCGG---GUCCACCUGCgAGCCAUCg -3' miRNA: 3'- -CAGGCCagcUAGGUGGGCG-UUGGUGG- -5' |
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2899 | 5' | -57.3 | NC_001493.1 | + | 58655 | 0.82 | 0.144619 |
Target: 5'- -aCCGGUCGGUCgGCCCGCGGgacgaCACCg -3' miRNA: 3'- caGGCCAGCUAGgUGGGCGUUg----GUGG- -5' |
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2899 | 5' | -57.3 | NC_001493.1 | + | 28199 | 1.12 | 0.001413 |
Target: 5'- gGUCCGGUCGAUCCACCCGCAACCACCg -3' miRNA: 3'- -CAGGCCAGCUAGGUGGGCGUUGGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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