miRNA display CGI


Results 41 - 60 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2899 5' -57.3 NC_001493.1 + 71222 0.68 0.774836
Target:  5'- -gCCGGUUGAugguaaucguUCCguggggACCgGCGACCAUCu -3'
miRNA:   3'- caGGCCAGCU----------AGG------UGGgCGUUGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 71499 0.68 0.76554
Target:  5'- aUCCGGcgguaCGGUCCACggCgGUAACCACa -3'
miRNA:   3'- cAGGCCa----GCUAGGUG--GgCGUUGGUGg -5'
2899 5' -57.3 NC_001493.1 + 72234 0.68 0.734086
Target:  5'- gGUCUGGUguaauucacgagcaUGAUCCGCguCUGCuuCCACCu -3'
miRNA:   3'- -CAGGCCA--------------GCUAGGUG--GGCGuuGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 73017 0.76 0.343329
Target:  5'- aGUCCGG---GUCCACCUGCgAGCCAUCg -3'
miRNA:   3'- -CAGGCCagcUAGGUGGGCG-UUGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 73458 0.67 0.818426
Target:  5'- -aCCGGaUGGUCCACgCCGUGaagaaacucauauGCCAUCa -3'
miRNA:   3'- caGGCCaGCUAGGUG-GGCGU-------------UGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 76025 0.67 0.81069
Target:  5'- --aCGGUUGGUCUugUCGCuguCCACg -3'
miRNA:   3'- cagGCCAGCUAGGugGGCGuu-GGUGg -5'
2899 5' -57.3 NC_001493.1 + 80027 0.68 0.756127
Target:  5'- aUUCGcUCGAUCgACCCuGCucACCACCc -3'
miRNA:   3'- cAGGCcAGCUAGgUGGG-CGu-UGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 81486 0.67 0.784009
Target:  5'- -cCCGGUUGAU-CGCCCGCcauauACgCAUCg -3'
miRNA:   3'- caGGCCAGCUAgGUGGGCGu----UG-GUGG- -5'
2899 5' -57.3 NC_001493.1 + 81774 0.71 0.586863
Target:  5'- aGUCCGaGUCGGUCaugGCUCGCGcgacggagaucAUCACCg -3'
miRNA:   3'- -CAGGC-CAGCUAGg--UGGGCGU-----------UGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 87193 0.68 0.774836
Target:  5'- -aCCGaGUauGUCaccaCACCCGCAgcGCCACCg -3'
miRNA:   3'- caGGC-CAgcUAG----GUGGGCGU--UGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 87620 0.65 0.871449
Target:  5'- cGUCCGcgccgguagugcccGUCGAgucuucggaugacUCCGCCCGUggAGCCGgCu -3'
miRNA:   3'- -CAGGC--------------CAGCU-------------AGGUGGGCG--UUGGUgG- -5'
2899 5' -57.3 NC_001493.1 + 87712 0.67 0.819278
Target:  5'- -cCCGGgaGGUgaGCCCGCGACCGgCa -3'
miRNA:   3'- caGGCCagCUAggUGGGCGUUGGUgG- -5'
2899 5' -57.3 NC_001493.1 + 90137 0.72 0.51767
Target:  5'- -aCCGGcCGGUCCGUgCGCGACC-CCg -3'
miRNA:   3'- caGGCCaGCUAGGUGgGCGUUGGuGG- -5'
2899 5' -57.3 NC_001493.1 + 91055 0.69 0.67772
Target:  5'- aUgUGGgagCGAUUC-UCCGCGGCCGCCa -3'
miRNA:   3'- cAgGCCa--GCUAGGuGGGCGUUGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 91517 0.68 0.746608
Target:  5'- -aCCGGUUccUCCACCgGUuccuCCACCu -3'
miRNA:   3'- caGGCCAGcuAGGUGGgCGuu--GGUGG- -5'
2899 5' -57.3 NC_001493.1 + 91769 0.72 0.546998
Target:  5'- --aCGGagGGUgCGCCCGCGACCGgCg -3'
miRNA:   3'- cagGCCagCUAgGUGGGCGUUGGUgG- -5'
2899 5' -57.3 NC_001493.1 + 92812 0.75 0.350987
Target:  5'- cUCCGGUCGAgcucgccCCACCCGaCGGCguCCc -3'
miRNA:   3'- cAGGCCAGCUa------GGUGGGC-GUUGguGG- -5'
2899 5' -57.3 NC_001493.1 + 93116 0.69 0.697715
Target:  5'- cGUUCGGaUCGugCUAuCCCGCGGCCACg -3'
miRNA:   3'- -CAGGCC-AGCuaGGU-GGGCGUUGGUGg -5'
2899 5' -57.3 NC_001493.1 + 93477 0.67 0.827699
Target:  5'- -aCCGGUCcgcgcggUCACCCG-AACCAUCg -3'
miRNA:   3'- caGGCCAGcua----GGUGGGCgUUGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 93699 0.7 0.627236
Target:  5'- uUCaCGGUCGAUCUAUCgGUgaAACCaACCg -3'
miRNA:   3'- cAG-GCCAGCUAGGUGGgCG--UUGG-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.