miRNA display CGI


Results 61 - 80 of 85 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2899 5' -57.3 NC_001493.1 + 95910 0.68 0.774836
Target:  5'- -gCCGG-CGGUCCGCUCGacuACUACg -3'
miRNA:   3'- caGGCCaGCUAGGUGGGCgu-UGGUGg -5'
2899 5' -57.3 NC_001493.1 + 96196 0.67 0.793047
Target:  5'- cGUCaCGGggugugugagCGAcacgaggaagagUCUcacggcGCCCGCGACCGCCa -3'
miRNA:   3'- -CAG-GCCa---------GCU------------AGG------UGGGCGUUGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 102833 0.68 0.774836
Target:  5'- aUCCGGUCGcAUCuCGCUC---ACCACCc -3'
miRNA:   3'- cAGGCCAGC-UAG-GUGGGcguUGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 105978 0.66 0.867058
Target:  5'- -gCgGGUCGGaagUCACCCGUcACCuCCa -3'
miRNA:   3'- caGgCCAGCUa--GGUGGGCGuUGGuGG- -5'
2899 5' -57.3 NC_001493.1 + 107217 0.66 0.835947
Target:  5'- -cCCGG-CGGUCgACCUgaggGCGGCC-CCg -3'
miRNA:   3'- caGGCCaGCUAGgUGGG----CGUUGGuGG- -5'
2899 5' -57.3 NC_001493.1 + 109189 0.68 0.773912
Target:  5'- -aCCGGguucUCGGUCCaauggacaacgacGCCCuggaCAGCCGCCg -3'
miRNA:   3'- caGGCC----AGCUAGG-------------UGGGc---GUUGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 111653 0.69 0.707636
Target:  5'- gGUCCGacucuUCGggCgUACCCGCGAgCACCa -3'
miRNA:   3'- -CAGGCc----AGCuaG-GUGGGCGUUgGUGG- -5'
2899 5' -57.3 NC_001493.1 + 111740 0.67 0.801944
Target:  5'- cGUCCGucuuguaUCGGa-CACCCGUGAUCACCa -3'
miRNA:   3'- -CAGGCc------AGCUagGUGGGCGUUGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 114325 0.72 0.508032
Target:  5'- aUCCGGUgGA-CCGCCgGCGGCUuCCu -3'
miRNA:   3'- cAGGCCAgCUaGGUGGgCGUUGGuGG- -5'
2899 5' -57.3 NC_001493.1 + 114493 0.71 0.607013
Target:  5'- cUCgGGaUCGAggaagCCGCCgGCGGuCCACCg -3'
miRNA:   3'- cAGgCC-AGCUa----GGUGGgCGUU-GGUGG- -5'
2899 5' -57.3 NC_001493.1 + 117184 0.68 0.746608
Target:  5'- --aCGGUagGGUUCACgCCGUAGCUACCc -3'
miRNA:   3'- cagGCCAg-CUAGGUG-GGCGUUGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 118404 0.69 0.717495
Target:  5'- -cCCgGGUCGAUCgCGCCCuucuguuCGACCACg -3'
miRNA:   3'- caGG-CCAGCUAG-GUGGGc------GUUGGUGg -5'
2899 5' -57.3 NC_001493.1 + 118747 0.69 0.697715
Target:  5'- ---aGGUCGAggaugCCAucCCCGCGGCCGuCCc -3'
miRNA:   3'- caggCCAGCUa----GGU--GGGCGUUGGU-GG- -5'
2899 5' -57.3 NC_001493.1 + 119725 0.68 0.727283
Target:  5'- -gCCGGUCaccgugcucUCCACCUGC-ACCACa -3'
miRNA:   3'- caGGCCAGcu-------AGGUGGGCGuUGGUGg -5'
2899 5' -57.3 NC_001493.1 + 125439 0.66 0.835947
Target:  5'- -gCCGGUCGAgCCGCagcaGCAggaggggguACCGCUa -3'
miRNA:   3'- caGGCCAGCUaGGUGgg--CGU---------UGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 126252 0.69 0.667663
Target:  5'- -cCCGGaucgCGAaCCGgCCGCggUCACCg -3'
miRNA:   3'- caGGCCa---GCUaGGUgGGCGuuGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 128209 0.66 0.862593
Target:  5'- cGUCCGGuUCGAgcgCCgcgaguaucccgagcGCCC-CGACC-CCg -3'
miRNA:   3'- -CAGGCC-AGCUa--GG---------------UGGGcGUUGGuGG- -5'
2899 5' -57.3 NC_001493.1 + 128995 0.66 0.854218
Target:  5'- -gCCGGUagcCGAUCUcgcaucucuuucuguGCCCGCAcgcgaagAUCACCc -3'
miRNA:   3'- caGGCCA---GCUAGG---------------UGGGCGU-------UGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 129847 0.69 0.67772
Target:  5'- cGUCCcuUCGAgagcgCCACCCcCAucGCCACCa -3'
miRNA:   3'- -CAGGccAGCUa----GGUGGGcGU--UGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 130004 0.66 0.859575
Target:  5'- gGUCCGGgaaGAaaguggCACCCGCGcCCAUCc -3'
miRNA:   3'- -CAGGCCag-CUag----GUGGGCGUuGGUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.