Results 81 - 85 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2899 | 5' | -57.3 | NC_001493.1 | + | 130478 | 0.66 | 0.83513 |
Target: 5'- -cCCGG-CGGUCCGCCCcauggggGCAGgggggaagggcuUCGCCg -3' miRNA: 3'- caGGCCaGCUAGGUGGG-------CGUU------------GGUGG- -5' |
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2899 | 5' | -57.3 | NC_001493.1 | + | 130723 | 0.69 | 0.67772 |
Target: 5'- --aCGG-CGAccuuUCCACCCGCGGCCucgaucgcACCc -3' miRNA: 3'- cagGCCaGCU----AGGUGGGCGUUGG--------UGG- -5' |
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2899 | 5' | -57.3 | NC_001493.1 | + | 131628 | 0.7 | 0.637357 |
Target: 5'- ---aGGUCGAuggguuuuUCCGCCCuguccGCGAUCACCg -3' miRNA: 3'- caggCCAGCU--------AGGUGGG-----CGUUGGUGG- -5' |
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2899 | 5' | -57.3 | NC_001493.1 | + | 133139 | 0.66 | 0.866319 |
Target: 5'- aUCUGGaacaCGAUCCcgggcacGCCCGCGuuGCgGCCc -3' miRNA: 3'- cAGGCCa---GCUAGG-------UGGGCGU--UGgUGG- -5' |
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2899 | 5' | -57.3 | NC_001493.1 | + | 133901 | 0.67 | 0.801944 |
Target: 5'- -cCCaGUCcca-CACCCGCGugGCCACCg -3' miRNA: 3'- caGGcCAGcuagGUGGGCGU--UGGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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