Results 81 - 85 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2899 | 5' | -57.3 | NC_001493.1 | + | 9885 | 0.66 | 0.835947 |
Target: 5'- -gCCGGUCGAgCCGCagcaGCAggaggggguACCGCUa -3' miRNA: 3'- caGGCCAGCUaGGUGgg--CGU---------UGGUGG- -5' |
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2899 | 5' | -57.3 | NC_001493.1 | + | 4171 | 0.68 | 0.727283 |
Target: 5'- -gCCGGUCaccgugcucUCCACCUGC-ACCACa -3' miRNA: 3'- caGGCCAGcu-------AGGUGGGCGuUGGUGg -5' |
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2899 | 5' | -57.3 | NC_001493.1 | + | 3193 | 0.69 | 0.697715 |
Target: 5'- ---aGGUCGAggaugCCAucCCCGCGGCCGuCCc -3' miRNA: 3'- caggCCAGCUa----GGU--GGGCGUUGGU-GG- -5' |
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2899 | 5' | -57.3 | NC_001493.1 | + | 2850 | 0.69 | 0.717495 |
Target: 5'- -cCCgGGUCGAUCgCGCCCuucuguuCGACCACg -3' miRNA: 3'- caGG-CCAGCUAG-GUGGGc------GUUGGUGg -5' |
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2899 | 5' | -57.3 | NC_001493.1 | + | 1630 | 0.68 | 0.746608 |
Target: 5'- --aCGGUagGGUUCACgCCGUAGCUACCc -3' miRNA: 3'- cagGCCAg-CUAGGUG-GGCGUUGGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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