Results 61 - 80 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2899 | 5' | -57.3 | NC_001493.1 | + | 37701 | 0.68 | 0.763666 |
Target: 5'- -cCCGGUCGAcgaccccUCCAucCCCGCGcacaugcgcaaguACCAgCa -3' miRNA: 3'- caGGCCAGCU-------AGGU--GGGCGU-------------UGGUgG- -5' |
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2899 | 5' | -57.3 | NC_001493.1 | + | 80027 | 0.68 | 0.756127 |
Target: 5'- aUUCGcUCGAUCgACCCuGCucACCACCc -3' miRNA: 3'- cAGGCcAGCUAGgUGGG-CGu-UGGUGG- -5' |
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2899 | 5' | -57.3 | NC_001493.1 | + | 129847 | 0.69 | 0.67772 |
Target: 5'- cGUCCcuUCGAgagcgCCACCCcCAucGCCACCa -3' miRNA: 3'- -CAGGccAGCUa----GGUGGGcGU--UGGUGG- -5' |
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2899 | 5' | -57.3 | NC_001493.1 | + | 16074 | 0.7 | 0.637357 |
Target: 5'- ---aGGUCGAuggguuuuUCCGCCCuguccGCGAUCACCg -3' miRNA: 3'- caggCCAGCU--------AGGUGGG-----CGUUGGUGG- -5' |
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2899 | 5' | -57.3 | NC_001493.1 | + | 131628 | 0.7 | 0.637357 |
Target: 5'- ---aGGUCGAuggguuuuUCCGCCCuguccGCGAUCACCg -3' miRNA: 3'- caggCCAGCU--------AGGUGGG-----CGUUGGUGG- -5' |
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2899 | 5' | -57.3 | NC_001493.1 | + | 31070 | 0.7 | 0.627236 |
Target: 5'- -aCCGGgaCGGUCCACgCCGUGACCGgUg -3' miRNA: 3'- caGGCCa-GCUAGGUG-GGCGUUGGUgG- -5' |
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2899 | 5' | -57.3 | NC_001493.1 | + | 64163 | 0.7 | 0.621165 |
Target: 5'- aUCCugGGUCGGUCCAUacgaCCGCAcgagucgugaccgauAUCACCa -3' miRNA: 3'- cAGG--CCAGCUAGGUG----GGCGU---------------UGGUGG- -5' |
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2899 | 5' | -57.3 | NC_001493.1 | + | 114493 | 0.71 | 0.607013 |
Target: 5'- cUCgGGaUCGAggaagCCGCCgGCGGuCCACCg -3' miRNA: 3'- cAGgCC-AGCUa----GGUGGgCGUU-GGUGG- -5' |
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2899 | 5' | -57.3 | NC_001493.1 | + | 91769 | 0.72 | 0.546998 |
Target: 5'- --aCGGagGGUgCGCCCGCGACCGgCg -3' miRNA: 3'- cagGCCagCUAgGUGGGCGUUGGUgG- -5' |
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2899 | 5' | -57.3 | NC_001493.1 | + | 90137 | 0.72 | 0.51767 |
Target: 5'- -aCCGGcCGGUCCGUgCGCGACC-CCg -3' miRNA: 3'- caGGCCaGCUAGGUGgGCGUUGGuGG- -5' |
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2899 | 5' | -57.3 | NC_001493.1 | + | 14293 | 0.69 | 0.67772 |
Target: 5'- cGUCCcuUCGAgagcgCCACCCcCAucGCCACCa -3' miRNA: 3'- -CAGGccAGCUa----GGUGGGcGU--UGGUGG- -5' |
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2899 | 5' | -57.3 | NC_001493.1 | + | 130723 | 0.69 | 0.67772 |
Target: 5'- --aCGG-CGAccuuUCCACCCGCGGCCucgaucgcACCc -3' miRNA: 3'- cagGCCaGCU----AGGUGGGCGUUGG--------UGG- -5' |
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2899 | 5' | -57.3 | NC_001493.1 | + | 4171 | 0.68 | 0.727283 |
Target: 5'- -gCCGGUCaccgugcucUCCACCUGC-ACCACa -3' miRNA: 3'- caGGCCAGcu-------AGGUGGGCGuUGGUGg -5' |
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2899 | 5' | -57.3 | NC_001493.1 | + | 119725 | 0.68 | 0.727283 |
Target: 5'- -gCCGGUCaccgugcucUCCACCUGC-ACCACa -3' miRNA: 3'- caGGCCAGcu-------AGGUGGGCGuUGGUGg -5' |
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2899 | 5' | -57.3 | NC_001493.1 | + | 23849 | 0.69 | 0.716513 |
Target: 5'- -aCUGGUCGGUcaugaucCCGCCCGgGAUC-CCa -3' miRNA: 3'- caGGCCAGCUA-------GGUGGGCgUUGGuGG- -5' |
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2899 | 5' | -57.3 | NC_001493.1 | + | 42077 | 0.69 | 0.697715 |
Target: 5'- -cUCGGUCGugaccauggCCAUCCGUcgcuuGGCCACCu -3' miRNA: 3'- caGGCCAGCua-------GGUGGGCG-----UUGGUGG- -5' |
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2899 | 5' | -57.3 | NC_001493.1 | + | 3193 | 0.69 | 0.697715 |
Target: 5'- ---aGGUCGAggaugCCAucCCCGCGGCCGuCCc -3' miRNA: 3'- caggCCAGCUa----GGU--GGGCGUUGGU-GG- -5' |
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2899 | 5' | -57.3 | NC_001493.1 | + | 118747 | 0.69 | 0.697715 |
Target: 5'- ---aGGUCGAggaugCCAucCCCGCGGCCGuCCc -3' miRNA: 3'- caggCCAGCUa----GGU--GGGCGUUGGU-GG- -5' |
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2899 | 5' | -57.3 | NC_001493.1 | + | 91055 | 0.69 | 0.67772 |
Target: 5'- aUgUGGgagCGAUUC-UCCGCGGCCGCCa -3' miRNA: 3'- cAgGCCa--GCUAGGuGGGCGUUGGUGG- -5' |
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2899 | 5' | -57.3 | NC_001493.1 | + | 15169 | 0.69 | 0.67772 |
Target: 5'- --aCGG-CGAccuuUCCACCCGCGGCCucgaucgcACCc -3' miRNA: 3'- cagGCCaGCU----AGGUGGGCGUUGG--------UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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