Results 81 - 85 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2899 | 5' | -57.3 | NC_001493.1 | + | 42077 | 0.69 | 0.697715 |
Target: 5'- -cUCGGUCGugaccauggCCAUCCGUcgcuuGGCCACCu -3' miRNA: 3'- caGGCCAGCua-------GGUGGGCG-----UUGGUGG- -5' |
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2899 | 5' | -57.3 | NC_001493.1 | + | 3193 | 0.69 | 0.697715 |
Target: 5'- ---aGGUCGAggaugCCAucCCCGCGGCCGuCCc -3' miRNA: 3'- caggCCAGCUa----GGU--GGGCGUUGGU-GG- -5' |
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2899 | 5' | -57.3 | NC_001493.1 | + | 118747 | 0.69 | 0.697715 |
Target: 5'- ---aGGUCGAggaugCCAucCCCGCGGCCGuCCc -3' miRNA: 3'- caggCCAGCUa----GGU--GGGCGUUGGU-GG- -5' |
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2899 | 5' | -57.3 | NC_001493.1 | + | 91055 | 0.69 | 0.67772 |
Target: 5'- aUgUGGgagCGAUUC-UCCGCGGCCGCCa -3' miRNA: 3'- cAgGCCa--GCUAGGuGGGCGUUGGUGG- -5' |
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2899 | 5' | -57.3 | NC_001493.1 | + | 28199 | 1.12 | 0.001413 |
Target: 5'- gGUCCGGUCGAUCCACCCGCAACCACCg -3' miRNA: 3'- -CAGGCCAGCUAGGUGGGCGUUGGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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