miRNA display CGI


Results 41 - 60 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2899 5' -57.3 NC_001493.1 + 37035 0.68 0.774836
Target:  5'- -aCCGGcggggCGGaCCGCCaGCGACCACa -3'
miRNA:   3'- caGGCCa----GCUaGGUGGgCGUUGGUGg -5'
2899 5' -57.3 NC_001493.1 + 87193 0.68 0.774836
Target:  5'- -aCCGaGUauGUCaccaCACCCGCAgcGCCACCg -3'
miRNA:   3'- caGGC-CAgcUAG----GUGGGCGU--UGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 48526 0.66 0.844013
Target:  5'- -cCCGGUaGAgguuucugUCCGCCgGCGucgcguCCACCg -3'
miRNA:   3'- caGGCCAgCU--------AGGUGGgCGUu-----GGUGG- -5'
2899 5' -57.3 NC_001493.1 + 14924 0.66 0.83513
Target:  5'- -cCCGG-CGGUCCGCCCcauggggGCAGgggggaagggcuUCGCCg -3'
miRNA:   3'- caGGCCaGCUAGGUGGG-------CGUU------------GGUGG- -5'
2899 5' -57.3 NC_001493.1 + 13441 0.66 0.854218
Target:  5'- -gCCGGUagcCGAUCUcgcaucucuuucuguGCCCGCAcgcgaagAUCACCc -3'
miRNA:   3'- caGGCCA---GCUAGG---------------UGGGCGU-------UGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 81774 0.71 0.586863
Target:  5'- aGUCCGaGUCGGUCaugGCUCGCGcgacggagaucAUCACCg -3'
miRNA:   3'- -CAGGC-CAGCUAGg--UGGGCGU-----------UGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 93699 0.7 0.627236
Target:  5'- uUCaCGGUCGAUCUAUCgGUgaAACCaACCg -3'
miRNA:   3'- cAG-GCCAGCUAGGUGGgCG--UUGG-UGG- -5'
2899 5' -57.3 NC_001493.1 + 92812 0.75 0.350987
Target:  5'- cUCCGGUCGAgcucgccCCACCCGaCGGCguCCc -3'
miRNA:   3'- cAGGCCAGCUa------GGUGGGC-GUUGguGG- -5'
2899 5' -57.3 NC_001493.1 + 23106 0.66 0.851892
Target:  5'- -aUCGGUCGAuacgugacccUCCACCaaCAACCucuCCa -3'
miRNA:   3'- caGGCCAGCU----------AGGUGGgcGUUGGu--GG- -5'
2899 5' -57.3 NC_001493.1 + 2850 0.69 0.717495
Target:  5'- -cCCgGGUCGAUCgCGCCCuucuguuCGACCACg -3'
miRNA:   3'- caGG-CCAGCUAG-GUGGGc------GUUGGUGg -5'
2899 5' -57.3 NC_001493.1 + 9885 0.66 0.835947
Target:  5'- -gCCGGUCGAgCCGCagcaGCAggaggggguACCGCUa -3'
miRNA:   3'- caGGCCAGCUaGGUGgg--CGU---------UGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 51982 0.67 0.827699
Target:  5'- uUCCaGGUCGAgauucUCC-UCCGCGAaaaacucccCCGCCa -3'
miRNA:   3'- cAGG-CCAGCU-----AGGuGGGCGUU---------GGUGG- -5'
2899 5' -57.3 NC_001493.1 + 62062 0.67 0.819278
Target:  5'- -cCCGGUCG--UCGCCCGUugggauagcugAGCCGCg -3'
miRNA:   3'- caGGCCAGCuaGGUGGGCG-----------UUGGUGg -5'
2899 5' -57.3 NC_001493.1 + 46336 0.67 0.81069
Target:  5'- -cCCGGUCaucCCGCUCGacuCCACCa -3'
miRNA:   3'- caGGCCAGcuaGGUGGGCguuGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 133901 0.67 0.801944
Target:  5'- -cCCaGUCcca-CACCCGCGugGCCACCg -3'
miRNA:   3'- caGGcCAGcuagGUGGGCGU--UGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 111740 0.67 0.801944
Target:  5'- cGUCCGucuuguaUCGGa-CACCCGUGAUCACCa -3'
miRNA:   3'- -CAGGCc------AGCUagGUGGGCGUUGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 18347 0.67 0.801944
Target:  5'- -cCCaGUCcca-CACCCGCGugGCCACCg -3'
miRNA:   3'- caGGcCAGcuagGUGGGCGU--UGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 54889 0.68 0.73699
Target:  5'- -cCCGGUCag-CgC-CCCGCcGCCACCa -3'
miRNA:   3'- caGGCCAGcuaG-GuGGGCGuUGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 72234 0.68 0.734086
Target:  5'- gGUCUGGUguaauucacgagcaUGAUCCGCguCUGCuuCCACCu -3'
miRNA:   3'- -CAGGCCA--------------GCUAGGUG--GGCGuuGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 118404 0.69 0.717495
Target:  5'- -cCCgGGUCGAUCgCGCCCuucuguuCGACCACg -3'
miRNA:   3'- caGG-CCAGCUAG-GUGGGc------GUUGGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.