Results 61 - 80 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2899 | 5' | -57.3 | NC_001493.1 | + | 71222 | 0.68 | 0.774836 |
Target: 5'- -gCCGGUUGAugguaaucguUCCguggggACCgGCGACCAUCu -3' miRNA: 3'- caGGCCAGCU----------AGG------UGGgCGUUGGUGG- -5' |
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2899 | 5' | -57.3 | NC_001493.1 | + | 95910 | 0.68 | 0.774836 |
Target: 5'- -gCCGG-CGGUCCGCUCGacuACUACg -3' miRNA: 3'- caGGCCaGCUAGGUGGGCgu-UGGUGg -5' |
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2899 | 5' | -57.3 | NC_001493.1 | + | 14450 | 0.66 | 0.859575 |
Target: 5'- gGUCCGGgaaGAaaguggCACCCGCGcCCAUCc -3' miRNA: 3'- -CAGGCCag-CUag----GUGGGCGUuGGUGG- -5' |
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2899 | 5' | -57.3 | NC_001493.1 | + | 130004 | 0.66 | 0.859575 |
Target: 5'- gGUCCGGgaaGAaaguggCACCCGCGcCCAUCc -3' miRNA: 3'- -CAGGCCag-CUag----GUGGGCGUuGGUGG- -5' |
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2899 | 5' | -57.3 | NC_001493.1 | + | 12655 | 0.66 | 0.862593 |
Target: 5'- cGUCCGGuUCGAgcgCCgcgaguaucccgagcGCCC-CGACC-CCg -3' miRNA: 3'- -CAGGCC-AGCUa--GG---------------UGGGcGUUGGuGG- -5' |
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2899 | 5' | -57.3 | NC_001493.1 | + | 128209 | 0.66 | 0.862593 |
Target: 5'- cGUCCGGuUCGAgcgCCgcgaguaucccgagcGCCC-CGACC-CCg -3' miRNA: 3'- -CAGGCC-AGCUa--GG---------------UGGGcGUUGGuGG- -5' |
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2899 | 5' | -57.3 | NC_001493.1 | + | 17585 | 0.66 | 0.866319 |
Target: 5'- aUCUGGaacaCGAUCCcgggcacGCCCGCGuuGCgGCCc -3' miRNA: 3'- cAGGCCa---GCUAGG-------UGGGCGU--UGgUGG- -5' |
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2899 | 5' | -57.3 | NC_001493.1 | + | 133139 | 0.66 | 0.866319 |
Target: 5'- aUCUGGaacaCGAUCCcgggcacGCCCGCGuuGCgGCCc -3' miRNA: 3'- cAGGCCa---GCUAGG-------UGGGCGU--UGgUGG- -5' |
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2899 | 5' | -57.3 | NC_001493.1 | + | 105978 | 0.66 | 0.867058 |
Target: 5'- -gCgGGUCGGaagUCACCCGUcACCuCCa -3' miRNA: 3'- caGgCCAGCUa--GGUGGGCGuUGGuGG- -5' |
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2899 | 5' | -57.3 | NC_001493.1 | + | 30511 | 0.66 | 0.867058 |
Target: 5'- uGUCCGGggCGAUCC-CCCuu-GCCGUCa -3' miRNA: 3'- -CAGGCCa-GCUAGGuGGGcguUGGUGG- -5' |
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2899 | 5' | -57.3 | NC_001493.1 | + | 125439 | 0.66 | 0.835947 |
Target: 5'- -gCCGGUCGAgCCGCagcaGCAggaggggguACCGCUa -3' miRNA: 3'- caGGCCAGCUaGGUGgg--CGU---------UGGUGG- -5' |
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2899 | 5' | -57.3 | NC_001493.1 | + | 23106 | 0.66 | 0.851892 |
Target: 5'- -aUCGGUCGAuacgugacccUCCACCaaCAACCucuCCa -3' miRNA: 3'- caGGCCAGCU----------AGGUGGgcGUUGGu--GG- -5' |
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2899 | 5' | -57.3 | NC_001493.1 | + | 81486 | 0.67 | 0.784009 |
Target: 5'- -cCCGGUUGAU-CGCCCGCcauauACgCAUCg -3' miRNA: 3'- caGGCCAGCUAgGUGGGCGu----UG-GUGG- -5' |
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2899 | 5' | -57.3 | NC_001493.1 | + | 111740 | 0.67 | 0.801944 |
Target: 5'- cGUCCGucuuguaUCGGa-CACCCGUGAUCACCa -3' miRNA: 3'- -CAGGCc------AGCUagGUGGGCGUUGGUGG- -5' |
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2899 | 5' | -57.3 | NC_001493.1 | + | 18347 | 0.67 | 0.801944 |
Target: 5'- -cCCaGUCcca-CACCCGCGugGCCACCg -3' miRNA: 3'- caGGcCAGcuagGUGGGCGU--UGGUGG- -5' |
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2899 | 5' | -57.3 | NC_001493.1 | + | 133901 | 0.67 | 0.801944 |
Target: 5'- -cCCaGUCcca-CACCCGCGugGCCACCg -3' miRNA: 3'- caGGcCAGcuagGUGGGCGU--UGGUGG- -5' |
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2899 | 5' | -57.3 | NC_001493.1 | + | 46336 | 0.67 | 0.81069 |
Target: 5'- -cCCGGUCaucCCGCUCGacuCCACCa -3' miRNA: 3'- caGGCCAGcuaGGUGGGCguuGGUGG- -5' |
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2899 | 5' | -57.3 | NC_001493.1 | + | 62062 | 0.67 | 0.819278 |
Target: 5'- -cCCGGUCG--UCGCCCGUugggauagcugAGCCGCg -3' miRNA: 3'- caGGCCAGCuaGGUGGGCG-----------UUGGUGg -5' |
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2899 | 5' | -57.3 | NC_001493.1 | + | 51982 | 0.67 | 0.827699 |
Target: 5'- uUCCaGGUCGAgauucUCC-UCCGCGAaaaacucccCCGCCa -3' miRNA: 3'- cAGG-CCAGCU-----AGGuGGGCGUU---------GGUGG- -5' |
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2899 | 5' | -57.3 | NC_001493.1 | + | 9885 | 0.66 | 0.835947 |
Target: 5'- -gCCGGUCGAgCCGCagcaGCAggaggggguACCGCUa -3' miRNA: 3'- caGGCCAGCUaGGUGgg--CGU---------UGGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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