miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2899 5' -57.3 NC_001493.1 + 130478 0.66 0.83513
Target:  5'- -cCCGG-CGGUCCGCCCcauggggGCAGgggggaagggcuUCGCCg -3'
miRNA:   3'- caGGCCaGCUAGGUGGG-------CGUU------------GGUGG- -5'
2899 5' -57.3 NC_001493.1 + 14924 0.66 0.83513
Target:  5'- -cCCGG-CGGUCCGCCCcauggggGCAGgggggaagggcuUCGCCg -3'
miRNA:   3'- caGGCCaGCUAGGUGGG-------CGUU------------GGUGG- -5'
2899 5' -57.3 NC_001493.1 + 93477 0.67 0.827699
Target:  5'- -aCCGGUCcgcgcggUCACCCG-AACCAUCg -3'
miRNA:   3'- caGGCCAGcua----GGUGGGCgUUGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 51982 0.67 0.827699
Target:  5'- uUCCaGGUCGAgauucUCC-UCCGCGAaaaacucccCCGCCa -3'
miRNA:   3'- cAGG-CCAGCU-----AGGuGGGCGUU---------GGUGG- -5'
2899 5' -57.3 NC_001493.1 + 87712 0.67 0.819278
Target:  5'- -cCCGGgaGGUgaGCCCGCGACCGgCa -3'
miRNA:   3'- caGGCCagCUAggUGGGCGUUGGUgG- -5'
2899 5' -57.3 NC_001493.1 + 62062 0.67 0.819278
Target:  5'- -cCCGGUCG--UCGCCCGUugggauagcugAGCCGCg -3'
miRNA:   3'- caGGCCAGCuaGGUGGGCG-----------UUGGUGg -5'
2899 5' -57.3 NC_001493.1 + 73458 0.67 0.818426
Target:  5'- -aCCGGaUGGUCCACgCCGUGaagaaacucauauGCCAUCa -3'
miRNA:   3'- caGGCCaGCUAGGUG-GGCGU-------------UGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 76025 0.67 0.81069
Target:  5'- --aCGGUUGGUCUugUCGCuguCCACg -3'
miRNA:   3'- cagGCCAGCUAGGugGGCGuu-GGUGg -5'
2899 5' -57.3 NC_001493.1 + 40475 0.67 0.81069
Target:  5'- --gCGGgCGAUCCACCuCGaugGAUCGCCu -3'
miRNA:   3'- cagGCCaGCUAGGUGG-GCg--UUGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 46336 0.67 0.81069
Target:  5'- -cCCGGUCaucCCGCUCGacuCCACCa -3'
miRNA:   3'- caGGCCAGcuaGGUGGGCguuGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 63394 0.67 0.808082
Target:  5'- -aCCGG-CGAUgcccacgggagcgaCCGCaCCGUgguGACCACCa -3'
miRNA:   3'- caGGCCaGCUA--------------GGUG-GGCG---UUGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 133901 0.67 0.801944
Target:  5'- -cCCaGUCcca-CACCCGCGugGCCACCg -3'
miRNA:   3'- caGGcCAGcuagGUGGGCGU--UGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 18347 0.67 0.801944
Target:  5'- -cCCaGUCcca-CACCCGCGugGCCACCg -3'
miRNA:   3'- caGGcCAGcuagGUGGGCGU--UGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 40768 0.67 0.801944
Target:  5'- -gCCGGUgGGgguauccaUCCACCCGCAguauuuguACCAg- -3'
miRNA:   3'- caGGCCAgCU--------AGGUGGGCGU--------UGGUgg -5'
2899 5' -57.3 NC_001493.1 + 111740 0.67 0.801944
Target:  5'- cGUCCGucuuguaUCGGa-CACCCGUGAUCACCa -3'
miRNA:   3'- -CAGGCc------AGCUagGUGGGCGUUGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 96196 0.67 0.793047
Target:  5'- cGUCaCGGggugugugagCGAcacgaggaagagUCUcacggcGCCCGCGACCGCCa -3'
miRNA:   3'- -CAG-GCCa---------GCU------------AGG------UGGGCGUUGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 32738 0.67 0.784009
Target:  5'- -cCCGGUCGcgaccgGUCCgGCCCGaGACC-CCu -3'
miRNA:   3'- caGGCCAGC------UAGG-UGGGCgUUGGuGG- -5'
2899 5' -57.3 NC_001493.1 + 81486 0.67 0.784009
Target:  5'- -cCCGGUUGAU-CGCCCGCcauauACgCAUCg -3'
miRNA:   3'- caGGCCAGCUAgGUGGGCGu----UG-GUGG- -5'
2899 5' -57.3 NC_001493.1 + 70810 0.68 0.774836
Target:  5'- -aCCGcGUCGuUCCACgCGaCGACCAUUa -3'
miRNA:   3'- caGGC-CAGCuAGGUGgGC-GUUGGUGG- -5'
2899 5' -57.3 NC_001493.1 + 102833 0.68 0.774836
Target:  5'- aUCCGGUCGcAUCuCGCUC---ACCACCc -3'
miRNA:   3'- cAGGCCAGC-UAG-GUGGGcguUGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.