miRNA display CGI


Results 121 - 140 of 562 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28990 3' -62.9 NC_006146.1 + 1456 0.67 0.553756
Target:  5'- gGAGGCCcggccuccacaCACGGCCUcuccgcGGGCCuccacacguGGCCu -3'
miRNA:   3'- gCUCCGGa----------GUGUCGGG------UCCGGu--------CCGG- -5'
28990 3' -62.9 NC_006146.1 + 66181 0.67 0.57197
Target:  5'- cCGAgGGCCagaCGCAGgagcugaCCCAGGCgacgagaucCAGGCCc -3'
miRNA:   3'- -GCU-CCGGa--GUGUC-------GGGUCCG---------GUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 51913 0.67 0.570046
Target:  5'- gGGGGCCUCcgaggcaccgacggGCGGCCCcGGUgcGGUCu -3'
miRNA:   3'- gCUCCGGAG--------------UGUCGGGuCCGguCCGG- -5'
28990 3' -62.9 NC_006146.1 + 60782 0.67 0.563322
Target:  5'- gCGGGGCUUaau-GCCCGGcgucuGCCuGGCCa -3'
miRNA:   3'- -GCUCCGGAguguCGGGUC-----CGGuCCGG- -5'
28990 3' -62.9 NC_006146.1 + 129316 0.67 0.534773
Target:  5'- -cGGGCCUCuCcGCCUcGGCCAgccaguaggcGGCCg -3'
miRNA:   3'- gcUCCGGAGuGuCGGGuCCGGU----------CCGG- -5'
28990 3' -62.9 NC_006146.1 + 37691 0.67 0.534773
Target:  5'- aCGAGGCaa-GgAGCCCAGGUgAGaCCu -3'
miRNA:   3'- -GCUCCGgagUgUCGGGUCCGgUCcGG- -5'
28990 3' -62.9 NC_006146.1 + 23166 0.67 0.544238
Target:  5'- aGAGuCgCUCGCGGCCCgcuauuacccAGGCCccGCCg -3'
miRNA:   3'- gCUCcG-GAGUGUCGGG----------UCCGGucCGG- -5'
28990 3' -62.9 NC_006146.1 + 139042 0.67 0.531004
Target:  5'- aGAGGCCUUggaacggguaacugGCGGCCaccauaCGGGCCcugguggcgcgggGGGCUg -3'
miRNA:   3'- gCUCCGGAG--------------UGUCGG------GUCCGG-------------UCCGG- -5'
28990 3' -62.9 NC_006146.1 + 51774 0.67 0.544238
Target:  5'- gGuGGCCUCuCuGCCCAGaGCCGaguccaGCCa -3'
miRNA:   3'- gCuCCGGAGuGuCGGGUC-CGGUc-----CGG- -5'
28990 3' -62.9 NC_006146.1 + 67211 0.67 0.534773
Target:  5'- cCGuGGCCggUCGCcuGGCC--GGCCAGGCa -3'
miRNA:   3'- -GCuCCGG--AGUG--UCGGguCCGGUCCGg -5'
28990 3' -62.9 NC_006146.1 + 109146 0.67 0.538552
Target:  5'- aGAGGCCUCgGCcgcugccuugguuucGGUCCcGGCCcuuagucugAGGCCc -3'
miRNA:   3'- gCUCCGGAG-UG---------------UCGGGuCCGG---------UCCGG- -5'
28990 3' -62.9 NC_006146.1 + 43245 0.67 0.543289
Target:  5'- gGGGuGCCUCggcgccagcGCGGCCUggacaagAGGCagCGGGCCg -3'
miRNA:   3'- gCUC-CGGAG---------UGUCGGG-------UCCG--GUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 65183 0.67 0.544238
Target:  5'- uGGGGCuCUUGgAGCCCuAGGCgCucuggGGGCCc -3'
miRNA:   3'- gCUCCG-GAGUgUCGGG-UCCG-G-----UCCGG- -5'
28990 3' -62.9 NC_006146.1 + 66568 0.67 0.544238
Target:  5'- uGuGGCgCagGCGGCgCAGGC-AGGCCg -3'
miRNA:   3'- gCuCCG-GagUGUCGgGUCCGgUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 34046 0.67 0.544238
Target:  5'- cCGGGGCCUaugcCGGCCgGGGgUcccguggcacgGGGCCg -3'
miRNA:   3'- -GCUCCGGAgu--GUCGGgUCCgG-----------UCCGG- -5'
28990 3' -62.9 NC_006146.1 + 45530 0.67 0.553756
Target:  5'- gGGGGCCUg--GGCCUccuuGGGCUuGGCCg -3'
miRNA:   3'- gCUCCGGAgugUCGGG----UCCGGuCCGG- -5'
28990 3' -62.9 NC_006146.1 + 157494 0.67 0.553756
Target:  5'- -cGGGCCUUGCAGaCCuGGCUgAGGCa -3'
miRNA:   3'- gcUCCGGAGUGUCgGGuCCGG-UCCGg -5'
28990 3' -62.9 NC_006146.1 + 160666 0.67 0.553756
Target:  5'- gGAGGCCuUCAgGGCC--GGCacaugaccaGGGCCg -3'
miRNA:   3'- gCUCCGG-AGUgUCGGguCCGg--------UCCGG- -5'
28990 3' -62.9 NC_006146.1 + 139682 0.67 0.563322
Target:  5'- aGGGGcCCUCAguGUgCCAGGCUugugguuaAGGUCc -3'
miRNA:   3'- gCUCC-GGAGUguCG-GGUCCGG--------UCCGG- -5'
28990 3' -62.9 NC_006146.1 + 170496 0.67 0.544238
Target:  5'- gGGGGCUUCccCGGaCCCccagcgcgcggcGGGCgGGGCCu -3'
miRNA:   3'- gCUCCGGAGu-GUC-GGG------------UCCGgUCCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.