Results 41 - 60 of 562 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28990 | 3' | -62.9 | NC_006146.1 | + | 57225 | 0.74 | 0.22228 |
Target: 5'- gGAGGCCg---GGCCCGGGCCcGaGCCa -3' miRNA: 3'- gCUCCGGagugUCGGGUCCGGuC-CGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 153305 | 0.74 | 0.227514 |
Target: 5'- -cAGGCacca-GGCCCGGGCCAGGUCg -3' miRNA: 3'- gcUCCGgagugUCGGGUCCGGUCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 129048 | 0.74 | 0.227514 |
Target: 5'- aCGAGGCCccggUAGCCCcuGGCCAcGGCCc -3' miRNA: 3'- -GCUCCGGagu-GUCGGGu-CCGGU-CCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 98334 | 0.74 | 0.22228 |
Target: 5'- aCGGGGCCgggCGCGGCCCGucccGGuCCAGGagaCa -3' miRNA: 3'- -GCUCCGGa--GUGUCGGGU----CC-GGUCCg--G- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 43663 | 0.74 | 0.238294 |
Target: 5'- aGGGGCCcggcUCGCAuucGCuCCAGGCCcuccgagaAGGCCa -3' miRNA: 3'- gCUCCGG----AGUGU---CG-GGUCCGG--------UCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 115981 | 0.73 | 0.273205 |
Target: 5'- uCGAGGCCUacugcCGGUCCcugaAGGCC-GGCCa -3' miRNA: 3'- -GCUCCGGAgu---GUCGGG----UCCGGuCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 32022 | 0.73 | 0.254679 |
Target: 5'- aGGGGCCUCGggacgaggcgcUGGCCCAGGucaugacCCGGGCg -3' miRNA: 3'- gCUCCGGAGU-----------GUCGGGUCC-------GGUCCGg -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 122517 | 0.73 | 0.271366 |
Target: 5'- gGAGGCCgCGgAGCCCGGGugguucgcggaacuCgAGGCCg -3' miRNA: 3'- gCUCCGGaGUgUCGGGUCC--------------GgUCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 70000 | 0.73 | 0.243842 |
Target: 5'- uCGGGGaCCcCACGGCCgAGacCCAGGCCg -3' miRNA: 3'- -GCUCC-GGaGUGUCGGgUCc-GGUCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 41775 | 0.73 | 0.25526 |
Target: 5'- gGAGGCCcUGC-GCCCGGGCgcccgcucuCAGGCCc -3' miRNA: 3'- gCUCCGGaGUGuCGGGUCCG---------GUCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 69862 | 0.73 | 0.249497 |
Target: 5'- gGAGGUCgggCGuagaGGCCCAGGuCCAcGGCCg -3' miRNA: 3'- gCUCCGGa--GUg---UCGGGUCC-GGU-CCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 15790 | 0.73 | 0.249497 |
Target: 5'- aGAGGCC-CGCGGCCauugGGGCCAGcaagcgagaccaGCCc -3' miRNA: 3'- gCUCCGGaGUGUCGGg---UCCGGUC------------CGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 18868 | 0.73 | 0.249497 |
Target: 5'- aGAGGCC-CGCGGCCauugGGGCCAGcaagcgagaccaGCCc -3' miRNA: 3'- gCUCCGGaGUGUCGGg---UCCGGUC------------CGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 25023 | 0.73 | 0.249497 |
Target: 5'- aGAGGCC-CGCGGCCauugGGGCCAGcaagcgagaccaGCCc -3' miRNA: 3'- gCUCCGGaGUGUCGGg---UCCGGUC------------CGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 12711 | 0.73 | 0.249497 |
Target: 5'- aGAGGCC-CGCGGCCauugGGGCCAGcaagcgagaccaGCCc -3' miRNA: 3'- gCUCCGGaGUGUCGGg---UCCGGUC------------CGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 28101 | 0.73 | 0.249497 |
Target: 5'- aGAGGCC-CGCGGCCauugGGGCCAGcaagcgagaccaGCCc -3' miRNA: 3'- gCUCCGGaGUGUCGGg---UCCGGUC------------CGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 167568 | 0.73 | 0.249497 |
Target: 5'- gGAGGCC-CGCGGagaggCCguguguggAGGCCGGGCCu -3' miRNA: 3'- gCUCCGGaGUGUCg----GG--------UCCGGUCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 42292 | 0.73 | 0.243842 |
Target: 5'- gGAGGCCagGUAGCCCAGcGCCAGaaaguacaGCCg -3' miRNA: 3'- gCUCCGGagUGUCGGGUC-CGGUC--------CGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 3800 | 0.73 | 0.249497 |
Target: 5'- uGuGGCC-CACAGUCaggucuGGGUCAGGCCa -3' miRNA: 3'- gCuCCGGaGUGUCGGg-----UCCGGUCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 40863 | 0.73 | 0.26054 |
Target: 5'- gGAGGCCcggcUCGCGGUCCGGagacggaGCCGgGGCCu -3' miRNA: 3'- gCUCCGG----AGUGUCGGGUC-------CGGU-CCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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