miRNA display CGI


Results 61 - 80 of 562 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28990 3' -62.9 NC_006146.1 + 115981 0.73 0.273205
Target:  5'- uCGAGGCCUacugcCGGUCCcugaAGGCC-GGCCa -3'
miRNA:   3'- -GCUCCGGAgu---GUCGGG----UCCGGuCCGG- -5'
28990 3' -62.9 NC_006146.1 + 22945 0.73 0.261132
Target:  5'- --cGGCCUCuCGGUccaCCAGGCC-GGCCg -3'
miRNA:   3'- gcuCCGGAGuGUCG---GGUCCGGuCCGG- -5'
28990 3' -62.9 NC_006146.1 + 168500 0.73 0.249497
Target:  5'- gGAGGCC-CGCGGagaggCCguguguggAGGCCGGGCCu -3'
miRNA:   3'- gCUCCGGaGUGUCg----GG--------UCCGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 142543 0.73 0.273205
Target:  5'- gGAGGUgguugcggUGCAGCCUAGGCUAGGCg -3'
miRNA:   3'- gCUCCGga------GUGUCGGGUCCGGUCCGg -5'
28990 3' -62.9 NC_006146.1 + 70000 0.73 0.243842
Target:  5'- uCGGGGaCCcCACGGCCgAGacCCAGGCCg -3'
miRNA:   3'- -GCUCC-GGaGUGUCGGgUCc-GGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 169432 0.73 0.249497
Target:  5'- gGAGGCC-CGCGGagaggCCguguguggAGGCCGGGCCu -3'
miRNA:   3'- gCUCCGGaGUGUCg----GG--------UCCGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 18868 0.73 0.249497
Target:  5'- aGAGGCC-CGCGGCCauugGGGCCAGcaagcgagaccaGCCc -3'
miRNA:   3'- gCUCCGGaGUGUCGGg---UCCGGUC------------CGG- -5'
28990 3' -62.9 NC_006146.1 + 3800 0.73 0.249497
Target:  5'- uGuGGCC-CACAGUCaggucuGGGUCAGGCCa -3'
miRNA:   3'- gCuCCGGaGUGUCGGg-----UCCGGUCCGG- -5'
28990 3' -62.9 NC_006146.1 + 15790 0.73 0.249497
Target:  5'- aGAGGCC-CGCGGCCauugGGGCCAGcaagcgagaccaGCCc -3'
miRNA:   3'- gCUCCGGaGUGUCGGg---UCCGGUC------------CGG- -5'
28990 3' -62.9 NC_006146.1 + 69733 0.72 0.31898
Target:  5'- -aGGGCCagGCAGCCCAGGUaaAGGUUg -3'
miRNA:   3'- gcUCCGGagUGUCGGGUCCGg-UCCGG- -5'
28990 3' -62.9 NC_006146.1 + 14819 0.72 0.298687
Target:  5'- -cGGGCCggaggagggCACGGUCuCGGGCCcgGGGCCg -3'
miRNA:   3'- gcUCCGGa--------GUGUCGG-GUCCGG--UCCGG- -5'
28990 3' -62.9 NC_006146.1 + 152792 0.72 0.31898
Target:  5'- cCGAGaCCUgGgGGCCCGGGCCuggaAGGUCc -3'
miRNA:   3'- -GCUCcGGAgUgUCGGGUCCGG----UCCGG- -5'
28990 3' -62.9 NC_006146.1 + 155870 0.72 0.31898
Target:  5'- cCGAGaCCUgGgGGCCCGGGCCuggaAGGUCc -3'
miRNA:   3'- -GCUCcGGAgUgUCGGGUCCGG----UCCGG- -5'
28990 3' -62.9 NC_006146.1 + 158306 0.72 0.305339
Target:  5'- uGAGGCCUCGaGGgCCGGGUUcuGGGCUu -3'
miRNA:   3'- gCUCCGGAGUgUCgGGUCCGG--UCCGG- -5'
28990 3' -62.9 NC_006146.1 + 131455 0.72 0.31484
Target:  5'- uCGAGuuccuuaaauccauCCUCACGGgCCAGGCCccGGCCa -3'
miRNA:   3'- -GCUCc-------------GGAGUGUCgGGUCCGGu-CCGG- -5'
28990 3' -62.9 NC_006146.1 + 143559 0.72 0.31898
Target:  5'- cCGAGaCCUgGgGGCCCGGGCCuggaAGGUCc -3'
miRNA:   3'- -GCUCcGGAgUgUCGGGUCCGG----UCCGG- -5'
28990 3' -62.9 NC_006146.1 + 155227 0.72 0.305339
Target:  5'- uGAGGCCUCGaGGgCCGGGUUcuGGGCUu -3'
miRNA:   3'- gCUCCGGAGUgUCgGGUCCGG--UCCGG- -5'
28990 3' -62.9 NC_006146.1 + 149714 0.72 0.31898
Target:  5'- cCGAGaCCUgGgGGCCCGGGCCuggaAGGUCc -3'
miRNA:   3'- -GCUCcGGAgUgUCGGGUCCGG----UCCGG- -5'
28990 3' -62.9 NC_006146.1 + 146637 0.72 0.31898
Target:  5'- cCGAGaCCUgGgGGCCCGGGCCuggaAGGUCc -3'
miRNA:   3'- -GCUCcGGAgUgUCGGGUCCGG----UCCGG- -5'
28990 3' -62.9 NC_006146.1 + 105140 0.72 0.285722
Target:  5'- gCGAGGCCUCcucuaacgagACcGCCgCAGGUaagAGGCCg -3'
miRNA:   3'- -GCUCCGGAG----------UGuCGG-GUCCGg--UCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.