Results 81 - 100 of 562 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28990 | 3' | -62.9 | NC_006146.1 | + | 69733 | 0.72 | 0.31898 |
Target: 5'- -aGGGCCagGCAGCCCAGGUaaAGGUUg -3' miRNA: 3'- gcUCCGGagUGUCGGGUCCGg-UCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 155870 | 0.72 | 0.31898 |
Target: 5'- cCGAGaCCUgGgGGCCCGGGCCuggaAGGUCc -3' miRNA: 3'- -GCUCcGGAgUgUCGGGUCCGG----UCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 152149 | 0.72 | 0.305339 |
Target: 5'- uGAGGCCUCGaGGgCCGGGUUcuGGGCUu -3' miRNA: 3'- gCUCCGGAGUgUCgGGUCCGG--UCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 105140 | 0.72 | 0.285722 |
Target: 5'- gCGAGGCCUCcucuaacgagACcGCCgCAGGUaagAGGCCg -3' miRNA: 3'- -GCUCCGGAG----------UGuCGG-GUCCGg--UCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 14819 | 0.72 | 0.298687 |
Target: 5'- -cGGGCCggaggagggCACGGUCuCGGGCCcgGGGCCg -3' miRNA: 3'- gcUCCGGa--------GUGUCGG-GUCCGG--UCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 164462 | 0.72 | 0.298687 |
Target: 5'- uGGGGCCcCAUggaccccagGGCCCAcauGGCCcuGGGCCa -3' miRNA: 3'- gCUCCGGaGUG---------UCGGGU---CCGG--UCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 155227 | 0.72 | 0.305339 |
Target: 5'- uGAGGCCUCGaGGgCCGGGUUcuGGGCUu -3' miRNA: 3'- gCUCCGGAGUgUCgGGUCCGG--UCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 42018 | 0.72 | 0.298687 |
Target: 5'- cCGAGcuacucCCUCugGGCCCGGGCuCAcGCCg -3' miRNA: 3'- -GCUCc-----GGAGugUCGGGUCCG-GUcCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 149714 | 0.72 | 0.31898 |
Target: 5'- cCGAGaCCUgGgGGCCCGGGCCuggaAGGUCc -3' miRNA: 3'- -GCUCcGGAgUgUCGGGUCCGG----UCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 41612 | 0.72 | 0.292148 |
Target: 5'- gGGGGCUgguccgCugGGCCCGGGCgCAGaCCa -3' miRNA: 3'- gCUCCGGa-----GugUCGGGUCCG-GUCcGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 131455 | 0.72 | 0.31484 |
Target: 5'- uCGAGuuccuuaaauccauCCUCACGGgCCAGGCCccGGCCa -3' miRNA: 3'- -GCUCc-------------GGAGUGUCgGGUCCGGu-CCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 158306 | 0.72 | 0.305339 |
Target: 5'- uGAGGCCUCGaGGgCCGGGUUcuGGGCUu -3' miRNA: 3'- gCUCCGGAGUgUCgGGUCCGG--UCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 55735 | 0.72 | 0.305339 |
Target: 5'- -cAGGCCuUUACAGUCCcuGCCGGGCg -3' miRNA: 3'- gcUCCGG-AGUGUCGGGucCGGUCCGg -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 146637 | 0.72 | 0.31898 |
Target: 5'- cCGAGaCCUgGgGGCCCGGGCCuggaAGGUCc -3' miRNA: 3'- -GCUCcGGAgUgUCGGGUCCGG----UCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 146766 | 0.72 | 0.305339 |
Target: 5'- aGAGGCCgagUCACgcgacagguacaGGCCCGGuGCCAGccGCCc -3' miRNA: 3'- gCUCCGG---AGUG------------UCGGGUC-CGGUC--CGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 98974 | 0.72 | 0.312103 |
Target: 5'- --cGGCaua--GGCCCAGGUCAGGCCc -3' miRNA: 3'- gcuCCGgagugUCGGGUCCGGUCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 60622 | 0.72 | 0.305339 |
Target: 5'- cCGAGGCCaUCAUGGCagaCGGGgcucugCAGGCCa -3' miRNA: 3'- -GCUCCGG-AGUGUCGg--GUCCg-----GUCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 49552 | 0.72 | 0.279408 |
Target: 5'- gGAGGCCaCGCcGgCCAGGCCcagcauGGCCu -3' miRNA: 3'- gCUCCGGaGUGuCgGGUCCGGu-----CCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 56529 | 0.72 | 0.279408 |
Target: 5'- --cGGCCaUCAgCAGCUgacgcgucacgCGGGCCAGGCCc -3' miRNA: 3'- gcuCCGG-AGU-GUCGG-----------GUCCGGUCCGG- -5' |
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28990 | 3' | -62.9 | NC_006146.1 | + | 122664 | 0.71 | 0.325971 |
Target: 5'- gGGGGCCcuccgCGCGGCgcucacCCAGGCgcgcCAGGCCc -3' miRNA: 3'- gCUCCGGa----GUGUCG------GGUCCG----GUCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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